Variant report

Variant	rs9293894
Chromosome Location	chr6:73373953-73373954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16882711	0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4707978	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4707980	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67188382	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67895524	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs68141942	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6900103	0.93[ASN][1000 genomes]
rs6915647	0.83[CHB][hapmap]
rs6917707	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6922044	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs6926943	0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7749079	0.81[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7749264	0.86[ASN][1000 genomes]
rs7760979	0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7768117	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7776102	0.82[JPT][hapmap]
rs883631	0.91[ASN][1000 genomes]
rs883632	0.82[ASN][1000 genomes]
rs9293898	0.82[JPT][hapmap]
rs9293899	0.81[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs9342962	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9360573	0.84[ASN][1000 genomes]
rs9360584	0.86[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9360587	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9442830	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9442831	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9442832	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9442834	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9442835	0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9446734	0.81[CHB][hapmap]
rs9446735	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv463152	chr6:73369739-73406890	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603692	chr6:73369739-73406890	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:73359800-73386800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73362600-73379200	Weak transcription	Psoas Muscle	Psoas
4	chr6:73364400-73383200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73365000-73375200	Weak transcription	GM12878-XiMat	blood
6	chr6:73367800-73376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73372000-73386800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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