Variant report

Variant	rs12661851
Chromosome Location	chr6:12176198-12176199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12663812	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs12664121	0.89[ASN][1000 genomes]
rs12664849	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2228211	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs3777764	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3777772	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs3777774	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs3800499	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4484521	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4714187	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs60122380	0.88[ASN][1000 genomes]
rs6910367	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7741589	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7747677	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12164800-12179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:12164800-12180200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:12171200-12176200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:12174800-12176200	Enhancers	A549	lung
6	chr6:12174800-12176200	Enhancers	HMEC	breast
7	chr6:12175000-12176400	Enhancers	NHLF	lung
8	chr6:12175800-12176200	Enhancers	Brain Substantia Nigra	brain
9	chr6:12175800-12176200	Enhancers	HSMMtube	muscle
10	chr6:12176000-12176200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:12176000-12176200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:12176000-12176200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:12176000-12176200	Enhancers	Gastric	stomach
14	chr6:12176000-12176400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:12176000-12182800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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