Variant report

Variant	rs60122380
Chromosome Location	chr6:12170122-12170123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12661851	0.88[ASN][1000 genomes]
rs12664121	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16872348	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2157492	0.80[AMR][1000 genomes]
rs3777756	0.87[AMR][1000 genomes]
rs3777757	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3777764	0.80[AMR][1000 genomes]
rs3777767	0.80[AMR][1000 genomes]
rs3777772	0.80[AMR][1000 genomes]
rs3777777	0.80[AMR][1000 genomes]
rs6917623	0.80[AMR][1000 genomes]
rs6931770	0.80[AMR][1000 genomes]
rs72828103	0.80[AMR][1000 genomes]
rs72828104	0.80[AMR][1000 genomes]
rs7449638	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12160800-12170800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:12161400-12175800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12164000-12170600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:12164000-12173200	Weak transcription	NH-A	brain
5	chr6:12164200-12174200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:12164200-12174800	Weak transcription	HMEC	breast
7	chr6:12164400-12170400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:12164400-12174800	Weak transcription	NHEK	skin
9	chr6:12164600-12170400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:12164600-12170600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:12164600-12170600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:12164600-12170600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:12164600-12170800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:12164600-12170800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:12164600-12170800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:12164600-12171000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:12164600-12171800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:12164600-12172200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:12164600-12172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:12164600-12173800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:12164600-12174000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:12164600-12175800	Weak transcription	HSMMtube	muscle
23	chr6:12164600-12176000	Weak transcription	Gastric	stomach
24	chr6:12164800-12170400	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:12164800-12170600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:12164800-12170800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:12164800-12170800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:12164800-12171000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:12164800-12171200	Weak transcription	Fetal Brain Female	brain
30	chr6:12164800-12171600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:12164800-12171800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:12164800-12173400	Weak transcription	Fetal Kidney	kidney
33	chr6:12164800-12174000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:12164800-12175000	Weak transcription	NHDF-Ad	bronchial
35	chr6:12164800-12175200	Weak transcription	HSMM	muscle
36	chr6:12164800-12179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:12164800-12180200	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:12164800-12185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:12165000-12171000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:12165000-12171200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:12165000-12171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:12165400-12170600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:12165400-12170800	Weak transcription	Liver	Liver
44	chr6:12165600-12174800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:12166000-12174800	Weak transcription	A549	lung
46	chr6:12166200-12170800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:12166200-12171000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:12166200-12174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:12169400-12170200	Enhancers	Primary T cells from cord blood	blood

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