Variant report

Variant	rs12662373
Chromosome Location	chr6:15689848-15689849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15689426..15691062-chr6:16188089..16190345,2	K562	blood:
2	chr6:15689774..15693088-chr6:16205829..16209132,3	K562	blood:
3	chr6:15681708..15684305-chr6:15689801..15691675,2	K562	blood:
4	chr6:15689083..15690999-chr6:16131882..16134165,2	K562	blood:
5	chr6:15689750..15690620-chr6:16183530..16184123,2	MCF-7	breast:
6	chr6:15687288..15693257-chr6:16127517..16131016,8	K562	blood:
7	chr6:15688875..15695962-chr6:16127988..16134034,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484353	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10949310	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10949311	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12193563	0.85[AMR][1000 genomes]
rs12197897	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12204417	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210613	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211903	0.90[ASN][1000 genomes]
rs12212477	0.83[AMR][1000 genomes]
rs12660578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13190958	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13199398	0.81[AMR][1000 genomes]
rs13200381	0.83[AMR][1000 genomes]
rs13201966	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13202253	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13203504	0.82[ASN][1000 genomes]
rs13205159	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13205914	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13206364	0.85[AMR][1000 genomes]
rs13219203	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2022348	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031818	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4623247	0.82[ASN][1000 genomes]
rs55948867	0.85[AMR][1000 genomes]
rs6935329	0.85[AMR][1000 genomes]
rs6939629	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs737072	0.91[ASN][1000 genomes]
rs737073	0.91[ASN][1000 genomes]
rs7450621	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748587	0.83[AMR][1000 genomes]
rs751529	0.90[ASN][1000 genomes]
rs7740240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742580	0.83[AMR][1000 genomes]
rs7745707	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7758737	0.85[AMR][1000 genomes]
rs7759940	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9476895	0.89[ASN][1000 genomes]
rs9766154	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9766732	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15683800-15690400	Weak transcription	K562	blood
2	chr6:15685200-15690600	Weak transcription	Stomach Mucosa	stomach
3	chr6:15685400-15690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:15686800-15690000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:15686800-15690400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:15686800-15690800	Weak transcription	Fetal Thymus	thymus
7	chr6:15689000-15690600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:15689000-15692200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:15689600-15691000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:15689600-15691200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:15689800-15690000	Enhancers	Monocytes-CD14+_RO01746	blood

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