Variant report

Variant	rs55948867
Chromosome Location	chr6:15710308-15710309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15709788..15714363-chr6:16138909..16141924,4	K562	blood:
2	chr6:15708630..15712705-chr6:16139075..16141924,3	K562	blood:
3	chr6:15698629..15701193-chr6:15707870..15711464,3	K562	blood:

Variant related genes	Relation type
ENSG00000263712	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484353	0.84[AMR][1000 genomes]
rs10949310	0.88[AMR][1000 genomes]
rs10949311	0.88[AMR][1000 genomes]
rs12193563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197897	0.86[AMR][1000 genomes]
rs12204417	0.88[AMR][1000 genomes]
rs12210613	0.88[AMR][1000 genomes]
rs12212477	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12660578	0.85[AMR][1000 genomes]
rs12662373	0.85[AMR][1000 genomes]
rs13190958	0.88[AMR][1000 genomes]
rs13199398	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13200381	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13201966	0.88[AMR][1000 genomes]
rs13202253	0.87[AMR][1000 genomes]
rs13202470	0.98[ASN][1000 genomes]
rs13205159	0.88[AMR][1000 genomes]
rs13205914	0.88[AMR][1000 genomes]
rs13206364	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219203	0.83[AMR][1000 genomes]
rs2022348	0.83[AMR][1000 genomes]
rs2023428	0.98[ASN][1000 genomes]
rs2031818	0.88[AMR][1000 genomes]
rs2031819	0.93[ASN][1000 genomes]
rs6904878	0.93[ASN][1000 genomes]
rs6933564	0.93[ASN][1000 genomes]
rs6935329	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6939629	0.88[AMR][1000 genomes]
rs7450621	0.88[AMR][1000 genomes]
rs748587	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7740240	0.85[AMR][1000 genomes]
rs7742580	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7745707	0.86[AMR][1000 genomes]
rs7752961	0.98[ASN][1000 genomes]
rs7755731	0.98[ASN][1000 genomes]
rs7758737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759940	0.81[AMR][1000 genomes]
rs7761926	0.98[ASN][1000 genomes]
rs9476896	0.88[ASN][1000 genomes]
rs9766154	0.84[AMR][1000 genomes]
rs9766732	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv33801	chr6:15696893-15710520	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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