Variant report

Variant	rs12664016
Chromosome Location	chr6:34373649-34373650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34359534..34361314-chr6:34372594..34374235,2	K562	blood:

Variant related genes	Relation type
ENSG00000272325	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12662460	0.83[ASN][1000 genomes]
rs12664001	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12665397	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16889706	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16889714	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1811968	0.81[AFR][1000 genomes]
rs2006833	0.86[AFR][1000 genomes]
rs206919	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs28847046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778077	0.80[ASN][1000 genomes]
rs3798560	0.83[AFR][1000 genomes]
rs3798564	0.84[ASN][1000 genomes]
rs414739	0.82[AFR][1000 genomes]
rs4295465	0.82[AMR][1000 genomes]
rs4587164	0.90[AFR][1000 genomes]
rs4713775	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4713776	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4713777	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4713780	0.82[ASN][1000 genomes]
rs4713781	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4713784	0.81[AMR][1000 genomes]
rs4713786	0.83[AMR][1000 genomes]
rs58648597	0.84[ASN][1000 genomes]
rs61582147	0.83[AMR][1000 genomes]
rs62399909	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6912971	0.81[ASN][1000 genomes]
rs6924482	0.85[AFR][1000 genomes]
rs6925243	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935129	0.83[ASN][1000 genomes]
rs7775635	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380433	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34361000-34384800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:34361200-34382400	Weak transcription	Pancreas	Pancrea
3	chr6:34361200-34384800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:34361400-34378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:34361800-34382400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:34362200-34382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:34367400-34379800	Weak transcription	HepG2	liver
8	chr6:34370000-34383400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:34371000-34378200	Weak transcription	A549	lung
10	chr6:34371200-34378400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:34371200-34383400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:34371400-34384000	Weak transcription	Right Ventricle	heart
13	chr6:34372400-34379000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:34372400-34389400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:34373000-34382400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:34373600-34377000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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