The 2.0 version of rSNPBase

Variant report

Variant rs62399909
Chromosome Location chr6:34339793-34339794
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:34309800-34347200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr6:34315400-34351200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr6:34318200-34355800 Weak transcription Brain Germinal Matrix brain
4 chr6:34320400-34350400 Weak transcription Esophagus oesophagus
5 chr6:34327000-34351600 Weak transcription Ovary ovary
6 chr6:34327600-34342200 Weak transcription Fetal Kidney kidney
7 chr6:34327800-34356400 Weak transcription Hela-S3 cervix
8 chr6:34328000-34342000 Weak transcription Fetal Brain Female brain
9 chr6:34328000-34345400 Weak transcription Fetal Stomach stomach
10 chr6:34328000-34351200 Weak transcription Gastric stomach
11 chr6:34328600-34358000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr6:34329600-34345800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr6:34329800-34346400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr6:34329800-34351200 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr6:34331000-34358400 Weak transcription Aorta Aorta
16 chr6:34331200-34342200 Weak transcription Brain Angular Gyrus brain
17 chr6:34331200-34344400 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr6:34331200-34346000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr6:34331200-34346200 Weak transcription Brain Substantia Nigra brain
20 chr6:34331200-34346200 Weak transcription Stomach Mucosa stomach
21 chr6:34331200-34351600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr6:34331400-34340800 Weak transcription Brain Inferior Temporal Lobe brain
23 chr6:34331400-34341000 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr6:34331400-34341000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr6:34331400-34341200 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr6:34331400-34341200 Weak transcription Brain Hippocampus Middle brain
27 chr6:34331400-34342000 Weak transcription Brain Cingulate Gyrus brain
28 chr6:34331400-34345800 Weak transcription Fetal Intestine Small intestine
29 chr6:34331400-34346000 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr6:34331400-34348600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr6:34331400-34351400 Weak transcription H9 Cell Line embryonic stem cell
32 chr6:34331400-34353400 Weak transcription Small Intestine intestine
33 chr6:34331400-34353600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr6:34331600-34341200 Weak transcription Primary hematopoietic stem cells blood
35 chr6:34331600-34342000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr6:34331600-34351400 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr6:34331600-34353600 Weak transcription Fetal Intestine Large intestine
38 chr6:34331800-34342400 Weak transcription Liver Liver
39 chr6:34332000-34342000 Weak transcription GM12878-XiMat blood
40 chr6:34332000-34345600 Weak transcription Primary T cells from cord blood blood
41 chr6:34332400-34341200 Weak transcription Primary B cells from peripheral blood blood
42 chr6:34332600-34342200 Weak transcription Fetal Heart heart
43 chr6:34333000-34340200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr6:34333600-34341400 Weak transcription Colon Smooth Muscle Colon
45 chr6:34333600-34358000 Weak transcription HMEC breast
46 chr6:34334200-34350400 Weak transcription Lung lung
47 chr6:34334600-34345800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr6:34334600-34348600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr6:34334600-34350400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr6:34334800-34342000 Weak transcription Osteobl bone

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Last update: Aug 31, 2015