Variant report

Variant	rs2237098
Chromosome Location	chr6:34305897-34305898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34304154..34306840-chr6:34357586..34359775,2	MCF-7	breast:
2	chr6:34305355..34307280-chr6:34313931..34315752,2	MCF-7	breast:
3	chr6:34300486..34302209-chr6:34305816..34308305,2	MCF-7	breast:
4	chr6:34303920..34306349-chr6:34307899..34311010,3	K562	blood:
5	chr6:34305147..34308643-chr6:34314207..34316952,4	K562	blood:
6	chr6:34305250..34307284-chr6:34307723..34310637,2	MCF-7	breast:
7	chr6:34303886..34306765-chr6:34314497..34316952,3	K562	blood:
8	chr6:34299261..34302272-chr6:34303453..34305944,3	K562	blood:
9	chr6:34206295..34208546-chr6:34304125..34306595,2	K562	blood:
10	chr6:34305135..34307781-chr6:34356782..34358757,2	MCF-7	breast:
11	chr6:34289970..34292350-chr6:34305042..34307455,2	MCF-7	breast:
12	chr6:34206295..34209813-chr6:34303661..34306595,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs169584	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs206919	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs206920	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs206921	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs206924	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs206936	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs206941	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs206942	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3798556	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3798560	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs410340	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs414739	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs458576	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs464553	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713772	0.80[ASN][1000 genomes]
rs568502	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57622072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62399909	0.85[ASN][1000 genomes]
rs6907486	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912971	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6924682	0.84[ASN][1000 genomes]
rs6924982	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930978	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7752035	0.86[ASN][1000 genomes]
rs7765498	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9461981	0.87[AMR][1000 genomes]
rs9469775	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1794528	chr6:34267024-34308816	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2237098	NUDT3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34274400-34306400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:34274400-34309000	Weak transcription	NHDF-Ad	bronchial
4	chr6:34284000-34308200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:34284800-34310800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
7	chr6:34285400-34307800	Weak transcription	Liver	Liver
8	chr6:34285800-34308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:34286000-34308200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:34287600-34306400	Weak transcription	Fetal Lung	lung
12	chr6:34287600-34309200	Weak transcription	Pancreas	Pancrea
13	chr6:34289000-34325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:34289400-34308200	Weak transcription	Fetal Intestine Large	intestine
15	chr6:34291800-34307000	Weak transcription	Hela-S3	cervix
16	chr6:34292600-34308200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:34293000-34306400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:34293000-34308200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:34293400-34307600	Weak transcription	Fetal Thymus	thymus
20	chr6:34294000-34308800	Weak transcription	NH-A	brain
21	chr6:34296200-34309400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:34296600-34306200	Weak transcription	Fetal Brain Male	brain
23	chr6:34297400-34312800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:34298600-34326400	Weak transcription	A549	lung
25	chr6:34298800-34306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:34299400-34310800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:34299800-34306200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:34299800-34308800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:34301000-34307000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:34301200-34306800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:34301600-34318000	Weak transcription	Fetal Brain Female	brain
32	chr6:34301800-34307000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:34302000-34306400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:34302000-34306400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:34302000-34306400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:34302000-34306400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:34302000-34308200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:34302200-34306400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:34302400-34306200	Weak transcription	HepG2	liver
40	chr6:34302400-34307200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:34302600-34306400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:34302600-34306800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:34303000-34306400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:34303000-34306600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:34303000-34308600	Weak transcription	NHLF	lung
46	chr6:34303000-34312800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:34303200-34306000	Weak transcription	HSMMtube	muscle
48	chr6:34303200-34306200	Weak transcription	HSMM	muscle
49	chr6:34303200-34307600	Weak transcription	Osteobl	bone
50	chr6:34303600-34306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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