Variant report

Variant	rs7765498
Chromosome Location	chr6:34263037-34263038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34261986..34267851-chr6:34269330..34272911,9	K562	blood:
2	chr6:34262225..34265045-chr6:34266800..34268628,2	K562	blood:
3	chr6:34261035..34263371-chr6:34289848..34291371,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs169584	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1811968	0.82[EUR][1000 genomes]
rs2006833	0.84[EUR][1000 genomes]
rs206919	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs206920	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs206921	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs206924	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs206936	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs206941	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs206942	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2071928	0.80[ASN][1000 genomes]
rs2237098	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798556	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798560	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3913009	0.83[EUR][1000 genomes]
rs3913010	0.83[EUR][1000 genomes]
rs410340	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs414739	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs458576	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4587164	0.80[EUR][1000 genomes]
rs464553	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs568502	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57622072	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6907486	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912971	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6924482	0.83[EUR][1000 genomes]
rs6924982	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930978	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757586	0.83[EUR][1000 genomes]
rs7757900	0.83[EUR][1000 genomes]
rs9368813	0.83[EUR][1000 genomes]
rs9380433	0.83[EUR][1000 genomes]
rs9394214	0.84[EUR][1000 genomes]
rs9394215	0.83[EUR][1000 genomes]
rs9461981	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469775	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9469779	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7765498	NUDT3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34240600-34269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:34244400-34273400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:34245000-34263400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:34246000-34264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:34246600-34264000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:34246600-34264000	Strong transcription	Dnd41	blood
7	chr6:34251000-34283200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:34253600-34271200	Weak transcription	Stomach Mucosa	stomach
9	chr6:34255000-34263800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr6:34255200-34263800	Strong transcription	Fetal Stomach	stomach
11	chr6:34256600-34264400	Weak transcription	Right Atrium	heart
12	chr6:34257000-34264400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:34258200-34263600	Strong transcription	Fetal Muscle Leg	muscle
14	chr6:34258200-34263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:34258600-34263200	Strong transcription	Fetal Intestine Small	intestine
16	chr6:34258800-34264600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:34259200-34263600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:34259200-34263600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:34259200-34264000	Strong transcription	HepG2	liver
20	chr6:34259400-34263200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:34259400-34263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:34259400-34263800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr6:34259600-34263600	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:34259600-34264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:34259800-34263200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:34259800-34263400	Strong transcription	K562	blood
27	chr6:34260000-34263200	Strong transcription	Brain Anterior Caudate	brain
28	chr6:34260200-34263600	Weak transcription	Right Ventricle	heart
29	chr6:34260200-34272800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:34261200-34263200	Strong transcription	Left Ventricle	heart
31	chr6:34261200-34263400	Weak transcription	HSMM	muscle
32	chr6:34261400-34263800	Weak transcription	A549	lung
33	chr6:34261400-34264400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:34261400-34266800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:34261400-34269000	Weak transcription	NHDF-Ad	bronchial
36	chr6:34261400-34269200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:34261400-34269400	Weak transcription	NHLF	lung
38	chr6:34261400-34273400	Weak transcription	Fetal Kidney	kidney
39	chr6:34261400-34276000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:34261600-34263400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:34261600-34265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:34261600-34268600	Weak transcription	Brain Substantia Nigra	brain
43	chr6:34261600-34269200	Weak transcription	NH-A	brain
44	chr6:34261600-34269200	Weak transcription	Osteobl	bone
45	chr6:34261600-34273400	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:34261600-34276200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:34261800-34263400	Weak transcription	Fetal Heart	heart
48	chr6:34261800-34263600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:34261800-34268000	Weak transcription	Placenta	Placenta
50	chr6:34261800-34269200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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