Variant report

Variant	rs2071928
Chromosome Location	chr6:34261097-34261098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34260937..34262929-chr6:34283836..34285697,2	MCF-7	breast:
2	chr6:34261035..34263371-chr6:34289848..34291371,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12664001	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12665397	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1573905	1.00[CEU][hapmap]
rs16885998	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16889706	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16889714	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34384951	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3778077	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798562	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3798564	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713766	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4713770	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713772	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713773	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713774	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713775	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713776	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713777	0.82[AMR][1000 genomes]
rs4713780	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713781	0.85[EUR][1000 genomes]
rs4713783	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713784	1.00[CEU][hapmap]
rs58648597	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59310759	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60100381	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909732	1.00[CEU][hapmap]
rs6924682	0.94[AMR][1000 genomes]
rs6935129	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752035	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7765498	0.80[ASN][1000 genomes]
rs7767431	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9394200	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34240600-34269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:34244400-34273400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:34245000-34262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34245000-34263400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:34245600-34261600	Weak transcription	Gastric	stomach
6	chr6:34246000-34264400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:34246600-34264000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:34246600-34264000	Strong transcription	Dnd41	blood
9	chr6:34251000-34283200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:34253600-34271200	Weak transcription	Stomach Mucosa	stomach
11	chr6:34255000-34263800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr6:34255200-34263800	Strong transcription	Fetal Stomach	stomach
13	chr6:34256600-34264400	Weak transcription	Right Atrium	heart
14	chr6:34257000-34264400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:34258000-34262000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr6:34258200-34262000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:34258200-34263600	Strong transcription	Fetal Muscle Leg	muscle
18	chr6:34258200-34263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:34258400-34262200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:34258600-34263200	Strong transcription	Fetal Intestine Small	intestine
21	chr6:34258800-34262000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:34258800-34264600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:34259200-34262000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:34259200-34262000	Strong transcription	Fetal Thymus	thymus
25	chr6:34259200-34262200	Strong transcription	Adipose Nuclei	Adipose
26	chr6:34259200-34262800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:34259200-34263000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:34259200-34263000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:34259200-34263000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:34259200-34263600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:34259200-34263600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:34259200-34264000	Strong transcription	HepG2	liver
33	chr6:34259400-34261400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:34259400-34261400	Strong transcription	Fetal Intestine Large	intestine
35	chr6:34259400-34261600	Strong transcription	Osteobl	bone
36	chr6:34259400-34261800	Strong transcription	HUVEC	blood vessel
37	chr6:34259400-34262000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:34259400-34262000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:34259400-34262200	Strong transcription	Ovary	ovary
40	chr6:34259400-34262400	Strong transcription	Primary B cells from cord blood	blood
41	chr6:34259400-34262600	Strong transcription	Lung	lung
42	chr6:34259400-34262800	Strong transcription	Brain Hippocampus Middle	brain
43	chr6:34259400-34263000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:34259400-34263200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:34259400-34263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:34259400-34263800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr6:34259600-34261400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:34259600-34261600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:34259600-34261600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:34259600-34261600	Strong transcription	Brain Substantia Nigra	brain

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