Variant report

Variant	rs4713770
Chromosome Location	chr6:34273976-34273977
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34240075..34242677-chr6:34273875..34276752,2	K562	blood:
2	chr6:34263488..34269053-chr6:34269608..34275567,7	K562	blood:
3	chr6:34213029..34216924-chr6:34269938..34275237,5	K562	blood:
4	chr6:34273952..34276899-chr6:34292317..34294355,2	K562	blood:
5	chr6:34251313..34254635-chr6:34272399..34275413,3	K562	blood:
6	chr6:34273943..34276502-chr6:34283209..34285322,3	K562	blood:

Variant related genes	Relation type
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12664001	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12665397	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885998	0.82[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889706	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16889714	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs206919	0.83[CHB][hapmap]
rs206921	0.87[CHB][hapmap]
rs206936	0.87[CHB][hapmap]
rs206941	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs206942	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2071928	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34384951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3778077	0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3798560	0.83[CHB][hapmap]
rs3798562	0.82[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798564	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs410340	0.80[ASN][1000 genomes]
rs414739	0.83[CHB][hapmap]
rs464553	0.83[CHB][hapmap]
rs4711390	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713766	1.00[YRI][hapmap]
rs4713772	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713773	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713774	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713775	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4713776	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4713777	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs4713780	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713781	0.85[EUR][1000 genomes]
rs4713783	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs568502	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs58648597	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59310759	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60100381	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs611928	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs6912971	0.83[CHB][hapmap]
rs6924682	0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6924982	0.80[ASN][1000 genomes]
rs6925243	0.81[JPT][hapmap]
rs6930978	0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6935129	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752035	0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7767431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1794528	chr6:34267024-34308816	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34251000-34283200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:34261400-34276000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:34261600-34276200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:34261800-34275200	Weak transcription	Aorta	Aorta
5	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:34262000-34274000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:34262000-34276800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:34262000-34282600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34262000-34282800	Weak transcription	Primary T cells from cord blood	blood
10	chr6:34262000-34283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:34262000-34284600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:34262000-34286600	Weak transcription	Gastric	stomach
13	chr6:34262000-34289000	Weak transcription	Hela-S3	cervix
14	chr6:34262000-34292800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:34262200-34276000	Weak transcription	Pancreas	Pancrea
16	chr6:34262200-34295400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:34262200-34301200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:34262800-34290800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:34263800-34274000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:34263800-34282800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:34263800-34288400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:34264000-34282400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:34264000-34299000	Weak transcription	Dnd41	blood
24	chr6:34264600-34282400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:34264600-34284400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:34267400-34283400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:34268200-34274200	Weak transcription	Esophagus	oesophagus
28	chr6:34268400-34274800	Weak transcription	Placenta	Placenta
29	chr6:34268600-34278400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:34268600-34283400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:34269400-34275000	Weak transcription	Right Ventricle	heart
32	chr6:34269400-34282200	Weak transcription	Fetal Thymus	thymus
33	chr6:34269400-34282400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:34269600-34274000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:34269600-34274000	Weak transcription	Brain Angular Gyrus	brain
36	chr6:34269600-34274000	Weak transcription	Ovary	ovary
37	chr6:34269600-34274400	Weak transcription	HSMM	muscle
38	chr6:34269600-34277600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:34269600-34278400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:34269600-34279600	Weak transcription	NH-A	brain
41	chr6:34269600-34280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:34269600-34280600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:34269600-34286800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:34269800-34284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:34270000-34274000	Weak transcription	Osteobl	bone
46	chr6:34270000-34274200	Weak transcription	Right Atrium	heart
47	chr6:34270000-34282000	Weak transcription	GM12878-XiMat	blood
48	chr6:34270000-34283600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:34270400-34274200	Weak transcription	Psoas Muscle	Psoas
50	chr6:34270400-34274800	Weak transcription	Fetal Muscle Trunk	muscle

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