Variant report

Variant	rs7752035
Chromosome Location	chr6:34311414-34311415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34308267..34311502-chr6:34313780..34316538,3	K562	blood:
2	chr6:34309301..34312552-chr6:34312659..34315940,4	K562	blood:
3	chr6:34214571..34216737-chr6:34309233..34311711,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12664001	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12665397	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16885998	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16889706	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16889714	0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs169584	0.86[ASN][1000 genomes]
rs206919	0.86[JPT][hapmap]
rs206921	0.84[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs206936	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs206941	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs206942	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2071928	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2237098	0.86[ASN][1000 genomes]
rs28847046	0.82[ASN][1000 genomes]
rs34384951	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3778077	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798556	0.86[ASN][1000 genomes]
rs3798560	0.86[JPT][hapmap]
rs3798562	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798564	0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs414739	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs458576	0.82[ASN][1000 genomes]
rs464553	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4711390	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713770	0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713772	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713773	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713774	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713775	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713776	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713777	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713780	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4713781	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4713787	0.83[AMR][1000 genomes]
rs568502	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs57622072	0.86[ASN][1000 genomes]
rs58648597	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59310759	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60100381	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs611928	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs62399909	0.91[ASN][1000 genomes]
rs6912971	0.86[JPT][hapmap]
rs6924682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925243	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6930978	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6935129	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7767431	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7775635	0.83[ASN][1000 genomes]
rs9766229	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1797588	chr6:34310476-34319041	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
3	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:34289000-34325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:34297400-34312800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:34298600-34326400	Weak transcription	A549	lung
7	chr6:34301600-34318000	Weak transcription	Fetal Brain Female	brain
8	chr6:34303000-34312800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:34306000-34313800	Weak transcription	NHEK	skin
10	chr6:34306000-34327800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:34306000-34328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:34306600-34312200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:34307000-34312400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:34307000-34320000	Weak transcription	Ovary	ovary
15	chr6:34307400-34314200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:34308400-34312400	Enhancers	HUVEC	blood vessel
17	chr6:34308800-34313600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:34308800-34330800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:34309000-34311800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:34309200-34315800	Weak transcription	Placenta	Placenta
21	chr6:34309200-34318200	Weak transcription	Fetal Lung	lung
22	chr6:34309400-34312000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:34309400-34317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:34309400-34317800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:34309600-34314800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:34309600-34317200	Weak transcription	NHDF-Ad	bronchial
27	chr6:34309600-34319800	Weak transcription	Small Intestine	intestine
28	chr6:34309600-34329200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:34309800-34311600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:34309800-34311800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:34309800-34312200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:34309800-34312200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:34309800-34312200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:34309800-34312200	Weak transcription	Hela-S3	cervix
35	chr6:34309800-34313400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:34309800-34313600	Weak transcription	Primary B cells from cord blood	blood
37	chr6:34309800-34314000	Weak transcription	Fetal Intestine Large	intestine
38	chr6:34309800-34315000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:34309800-34316800	Weak transcription	Osteobl	bone
40	chr6:34309800-34317000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:34309800-34317000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:34309800-34317200	Weak transcription	HSMM	muscle
43	chr6:34309800-34318000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:34309800-34318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:34309800-34318000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:34309800-34318000	Weak transcription	Fetal Intestine Small	intestine
47	chr6:34309800-34318600	Weak transcription	HMEC	breast
48	chr6:34309800-34320000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:34309800-34320000	Weak transcription	Pancreas	Pancrea
50	chr6:34309800-34320200	Weak transcription	HepG2	liver

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