Variant report

Variant	rs7767431
Chromosome Location	chr6:34288026-34288027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34283435..34288525-chr6:34290742..34294904,6	K562	blood:
2	chr6:34287059..34289393-chr6:34361002..34363202,2	K562	blood:
3	chr6:34286471..34290477-chr6:34292697..34296631,5	K562	blood:
4	chr6:34285140..34288176-chr6:34300410..34302551,3	MCF-7	breast:
5	chr6:34287285..34290265-chr6:34433633..34435752,2	K562	blood:

Variant related genes	Relation type
ENSG00000124507	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12662460	0.84[ASN][1000 genomes]
rs12664001	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12665397	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16885998	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16889706	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16889714	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2071928	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34384951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778077	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798562	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798564	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713772	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713773	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713774	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713775	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713776	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713777	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4713780	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713781	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713783	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58648597	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59310759	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60100381	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62399909	0.84[ASN][1000 genomes]
rs6924682	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6935129	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7752035	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1794528	chr6:34267024-34308816	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34262000-34289000	Weak transcription	Hela-S3	cervix
3	chr6:34262000-34292800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:34262200-34295400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:34262200-34301200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:34262800-34290800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:34263800-34288400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:34264000-34299000	Weak transcription	Dnd41	blood
9	chr6:34272600-34288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:34274400-34306400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:34274400-34309000	Weak transcription	NHDF-Ad	bronchial
12	chr6:34275200-34298000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:34275400-34289400	Weak transcription	HUVEC	blood vessel
14	chr6:34275800-34299600	Weak transcription	Lung	lung
15	chr6:34280800-34295600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:34281400-34288200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:34284000-34301600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:34284000-34308200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:34284600-34293000	Weak transcription	Fetal Brain Female	brain
20	chr6:34284600-34300400	Weak transcription	Primary T cells from cord blood	blood
21	chr6:34284800-34289400	Enhancers	Fetal Intestine Large	intestine
22	chr6:34284800-34292600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:34284800-34299000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:34284800-34310800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:34285000-34305600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
27	chr6:34285400-34292400	Weak transcription	HSMMtube	muscle
28	chr6:34285400-34299200	Weak transcription	HSMM	muscle
29	chr6:34285400-34305200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:34285400-34305400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:34285400-34307800	Weak transcription	Liver	Liver
32	chr6:34285800-34308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:34286000-34292400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:34286000-34292800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:34286000-34308200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:34286400-34289600	Enhancers	Placenta	Placenta
38	chr6:34286400-34292600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:34286600-34289600	Enhancers	Psoas Muscle	Psoas
40	chr6:34286600-34302800	Weak transcription	Osteobl	bone
41	chr6:34286800-34288200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:34286800-34288400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:34286800-34292200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:34287000-34298000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:34287000-34299400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:34287000-34301200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:34287000-34305000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:34287200-34290600	Weak transcription	Small Intestine	intestine
49	chr6:34287200-34290600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:34287200-34291800	Weak transcription	Right Ventricle	heart

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