Variant report

Variant	rs12664412
Chromosome Location	chr6:133000800-133000801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12524890	0.85[ASN][1000 genomes]
rs12529776	0.85[ASN][1000 genomes]
rs12661455	0.85[ASN][1000 genomes]
rs12661928	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661954	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12662444	0.85[ASN][1000 genomes]
rs12663513	0.85[ASN][1000 genomes]
rs12664574	0.91[ASN][1000 genomes]
rs12665089	0.93[ASN][1000 genomes]
rs17061677	0.85[ASN][1000 genomes]
rs2206566	0.93[ASN][1000 genomes]
rs2223612	0.81[ASN][1000 genomes]
rs3798795	0.93[ASN][1000 genomes]
rs3798797	0.93[ASN][1000 genomes]
rs45511792	0.93[ASN][1000 genomes]
rs45568334	0.93[ASN][1000 genomes]
rs56898355	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58694797	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	esv275102	chr6:132996676-133001465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132993200-133002200	Weak transcription	Liver	Liver
2	chr6:132997400-133003000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:132998200-133003000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:132998400-133003000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:132999600-133003200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:133000000-133001000	Enhancers	HSMMtube	muscle
7	chr6:133000000-133001400	Enhancers	HSMM	muscle
8	chr6:133000200-133001000	Enhancers	GM12878-XiMat	blood
9	chr6:133000200-133001200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:133000400-133001000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:133000600-133000800	Weak transcription	Psoas Muscle	Psoas
12	chr6:133000800-133001200	ZNF genes & repeats	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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