Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527885	0.84[AMR][1000 genomes]
rs12529776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661928	0.85[ASN][1000 genomes]
rs12661954	0.86[ASN][1000 genomes]
rs12662444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664412	0.85[ASN][1000 genomes]
rs12664574	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12665089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2206566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2223612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3798795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4302684	0.80[AMR][1000 genomes]
rs45461891	0.88[AMR][1000 genomes]
rs45511792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45568334	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73546608	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133030800-133034400	Weak transcription	Placenta	Placenta
2	chr6:133031800-133033200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:133032200-133033600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:133032200-133034600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:133032400-133032800	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr6:133032400-133033000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:133032400-133034600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:133032600-133033000	Flanking Active TSS	Liver	Liver
9	chr6:133032600-133033600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search: