Variant report

Variant	rs4302684
Chromosome Location	chr6:133030389-133030390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12524890	0.80[AMR][1000 genomes]
rs12527885	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12529776	0.80[AMR][1000 genomes]
rs12661455	0.80[AMR][1000 genomes]
rs12662444	0.80[AMR][1000 genomes]
rs12663513	0.80[AMR][1000 genomes]
rs12665089	0.80[AMR][1000 genomes]
rs17061677	0.80[AMR][1000 genomes]
rs2206566	0.80[AMR][1000 genomes]
rs2223612	0.80[AMR][1000 genomes]
rs3798795	0.80[AMR][1000 genomes]
rs3798797	0.80[AMR][1000 genomes]
rs45511792	0.80[AMR][1000 genomes]
rs59566004	0.84[AFR][1000 genomes]
rs73546608	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	esv2165815	chr6:133030389-133030390	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133017800-133032200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:133028400-133031400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:133029000-133032200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:133029800-133030400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:133029800-133030800	Enhancers	Placenta	Placenta
6	chr6:133030200-133032200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:133030200-133032400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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