Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12660690	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197928	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340668	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16885212	1.00[CEU][hapmap]
rs2894818	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3822895	1.00[CEU][hapmap]
rs55897883	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61528841	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474776	0.85[EUR][1000 genomes]
rs9474777	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9474793	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991286	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54152600-54157400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:54153200-54157600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:54153800-54160000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:54154800-54157600	Enhancers	HUVEC	blood vessel
5	chr6:54154800-54157800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:54155400-54157000	Enhancers	NHLF	lung
7	chr6:54155400-54157200	Enhancers	NHDF-Ad	bronchial
8	chr6:54155400-54157400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:54155600-54157000	Enhancers	Osteobl	bone
10	chr6:54156000-54157000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:54156000-54157000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:54156000-54157600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:54156000-54158400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:54156200-54157600	Enhancers	HMEC	breast
15	chr6:54156200-54159800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:54156400-54157400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:54156600-54157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:54156600-54157600	Enhancers	NHEK	skin
19	chr6:54156800-54157000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:54156800-54158800	Weak transcription	NH-A	brain

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