Variant report

Variant	rs2894818
Chromosome Location	chr6:54137506-54137507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10080252	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10155669	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10484647	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1150874	0.92[JPT][hapmap]
rs11757700	0.85[JPT][hapmap]
rs12660690	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12664814	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13197928	0.96[AMR][1000 genomes]
rs1340664	1.00[JPT][hapmap]
rs1340665	1.00[JPT][hapmap]
rs1340668	1.00[CEU][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs1342831	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1417389	0.85[JPT][hapmap]
rs16869492	0.81[CHB][hapmap];0.81[CHD][hapmap];0.92[JPT][hapmap]
rs16885091	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs16885212	1.00[CEU][hapmap]
rs17755375	1.00[JPT][hapmap]
rs2180931	0.85[JPT][hapmap]
rs2275769	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2275770	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2792638	1.00[JPT][hapmap]
rs3822895	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs41530746	0.81[CHB][hapmap];0.81[CHD][hapmap];0.92[JPT][hapmap]
rs4329099	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4712059	0.85[JPT][hapmap]
rs55897883	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61528841	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6924913	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs816382	0.85[JPT][hapmap]
rs816383	0.85[JPT][hapmap]
rs816385	0.85[JPT][hapmap]
rs9283919	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9395916	0.85[JPT][hapmap]
rs9395917	0.85[JPT][hapmap]
rs9464034	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9474746	0.85[JPT][hapmap]
rs9474762	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9474766	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9474771	1.00[JPT][hapmap]
rs9474772	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9474774	0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9474776	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9474777	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9474793	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9885975	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs991286	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54137400-54137600	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links