Variant report

Variant	rs1417389
Chromosome Location	chr6:54077679-54077680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10080252	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10155669	0.85[JPT][hapmap]
rs10456172	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484647	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1074639	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10948803	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1150874	0.90[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs1150875	0.85[CHB][hapmap]
rs11757700	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12661972	0.82[ASN][1000 genomes]
rs1321885	0.80[YRI][hapmap]
rs1340664	0.85[JPT][hapmap]
rs1340665	0.85[JPT][hapmap]
rs1342831	0.81[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1407232	0.83[YRI][hapmap]
rs1407236	0.83[YRI][hapmap]
rs1407237	0.81[YRI][hapmap]
rs1417391	0.90[CHB][hapmap];0.82[YRI][hapmap]
rs1575220	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869492	0.82[ASN][1000 genomes]
rs16885091	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs17755375	0.85[JPT][hapmap]
rs1856829	0.82[ASN][1000 genomes]
rs2145758	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2180931	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2185505	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275769	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2275770	0.82[ASN][1000 genomes]
rs2792638	0.85[JPT][hapmap]
rs34961553	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4329099	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs4712059	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55689719	0.82[ASN][1000 genomes]
rs59132111	0.82[ASN][1000 genomes]
rs62397397	0.85[EUR][1000 genomes]
rs6458988	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458989	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6924913	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs6932559	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934602	0.82[ASN][1000 genomes]
rs6937413	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73741487	0.82[ASN][1000 genomes]
rs7740331	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816382	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816383	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816384	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816385	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816387	0.82[YRI][hapmap]
rs864642	0.82[YRI][hapmap]
rs9283919	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9296739	0.83[YRI][hapmap]
rs9296740	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9296741	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296742	0.82[ASN][1000 genomes]
rs9296743	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9395916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9395917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9395918	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464034	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9464042	0.82[ASN][1000 genomes]
rs9464043	0.82[ASN][1000 genomes]
rs9464045	0.82[ASN][1000 genomes]
rs9464046	0.82[ASN][1000 genomes]
rs9474762	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9474765	0.82[ASN][1000 genomes]
rs9474766	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9474768	0.82[ASN][1000 genomes]
rs9474771	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs9474772	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9474773	0.82[ASN][1000 genomes]
rs9474774	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9885975	0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
3	chr6:54070200-54098800	Weak transcription	Fetal Heart	heart
4	chr6:54070400-54095200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links