Variant report

Variant	rs9474765
Chromosome Location	chr6:54093479-54093480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10080252	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155669	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10456172	0.88[ASN][1000 genomes]
rs10484647	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10484648	0.90[EUR][1000 genomes]
rs10484649	0.90[EUR][1000 genomes]
rs1074639	0.88[ASN][1000 genomes]
rs1150874	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1150880	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1150884	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11757700	0.88[ASN][1000 genomes]
rs11963558	0.90[EUR][1000 genomes]
rs11965480	0.87[EUR][1000 genomes]
rs11966090	0.90[EUR][1000 genomes]
rs11966747	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969471	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969948	0.90[EUR][1000 genomes]
rs12177981	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12661972	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1299293	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1340664	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1340665	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340667	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1342831	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417389	0.82[ASN][1000 genomes]
rs1575220	0.86[ASN][1000 genomes]
rs16869492	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884761	0.90[EUR][1000 genomes]
rs16884835	0.90[EUR][1000 genomes]
rs16884943	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884946	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16885091	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755305	0.90[EUR][1000 genomes]
rs17755375	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17828437	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1856829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935839	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2145758	0.88[ASN][1000 genomes]
rs2145761	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2180931	0.87[ASN][1000 genomes]
rs2185505	0.87[ASN][1000 genomes]
rs2275769	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275770	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754794	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2754795	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2754798	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792630	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792631	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792634	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792635	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792636	0.85[EUR][1000 genomes]
rs2792638	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792646	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28847288	0.81[EUR][1000 genomes]
rs34961553	0.88[ASN][1000 genomes]
rs41530746	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4329099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712059	0.88[ASN][1000 genomes]
rs4715443	0.90[EUR][1000 genomes]
rs55689719	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760696	0.90[EUR][1000 genomes]
rs59132111	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458988	0.88[ASN][1000 genomes]
rs6458989	0.88[ASN][1000 genomes]
rs6905950	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6924913	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932559	0.87[ASN][1000 genomes]
rs6934602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934690	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6937413	0.85[ASN][1000 genomes]
rs73741487	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740331	0.87[ASN][1000 genomes]
rs7751241	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs816382	0.88[ASN][1000 genomes]
rs816383	0.88[ASN][1000 genomes]
rs816384	0.88[ASN][1000 genomes]
rs816385	0.88[ASN][1000 genomes]
rs9283919	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296741	0.87[ASN][1000 genomes]
rs9296742	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296743	0.87[ASN][1000 genomes]
rs9382309	0.83[AFR][1000 genomes]
rs9395916	0.88[ASN][1000 genomes]
rs9395918	0.83[ASN][1000 genomes]
rs9464027	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464028	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464030	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464034	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464039	0.82[AMR][1000 genomes]
rs9464042	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464043	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464045	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464046	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464047	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474748	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474754	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474755	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474762	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474766	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474768	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474771	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474772	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474773	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474774	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474775	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9885975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9942457	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
3	chr6:54070200-54098800	Weak transcription	Fetal Heart	heart
4	chr6:54070400-54095200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:54087600-54099200	Weak transcription	Right Ventricle	heart
6	chr6:54092800-54101600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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