Variant report

Variant	rs9464034
Chromosome Location	chr6:54071553-54071554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10080252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10155669	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10456172	0.83[ASN][1000 genomes]
rs10484647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10484648	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs10484649	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs1074639	0.83[ASN][1000 genomes]
rs10948803	0.81[CHB][hapmap]
rs1150874	1.00[CEU][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1150875	1.00[CEU][hapmap]
rs1150880	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1150884	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11757700	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11963558	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs11965480	0.87[EUR][1000 genomes]
rs11966090	0.90[EUR][1000 genomes]
rs11966747	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969471	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11969948	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs12177981	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12661972	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1299293	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1340664	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340665	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340667	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1342831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1417389	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1575220	0.81[ASN][1000 genomes]
rs16869492	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16884761	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[EUR][1000 genomes]
rs16884835	0.90[EUR][1000 genomes]
rs16884943	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16884946	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16885091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17755305	0.90[EUR][1000 genomes]
rs17755375	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17828437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1856829	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935839	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2145758	0.82[ASN][1000 genomes]
rs2145761	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2180931	0.81[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2185505	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs2275769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2754794	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2754795	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2754798	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2792630	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2792631	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2792634	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2792635	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2792636	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2792638	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2792646	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847288	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34961553	0.82[ASN][1000 genomes]
rs41530746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4329099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712059	0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4715443	0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs55689719	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55760696	0.90[EUR][1000 genomes]
rs59132111	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6458988	0.82[ASN][1000 genomes]
rs6458989	0.82[ASN][1000 genomes]
rs6905950	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6932559	0.81[ASN][1000 genomes]
rs6934602	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934690	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6937413	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs73741487	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7740331	0.81[ASN][1000 genomes]
rs7751241	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs816382	0.80[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs816383	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs816384	0.83[ASN][1000 genomes]
rs816385	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9283919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296741	0.81[ASN][1000 genomes]
rs9296742	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296743	0.81[ASN][1000 genomes]
rs9395916	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9395917	0.85[JPT][hapmap]
rs9464027	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464028	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464030	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464042	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464043	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464045	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464046	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464047	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9474746	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs9474748	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9474754	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9474755	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9474762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474765	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474768	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474773	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474775	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9474777	0.85[JPT][hapmap]
rs9885975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942457	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
3	chr6:54069200-54072000	Enhancers	HepG2	liver
4	chr6:54070200-54098800	Weak transcription	Fetal Heart	heart
5	chr6:54070400-54095200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54070600-54071600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:54071200-54071600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:54071200-54071600	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links