Variant report

Variant	rs2792634
Chromosome Location	chr6:54047177-54047178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10080252	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10155669	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10484647	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10484648	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10484649	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1150874	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1150875	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963558	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11965480	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11966090	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11966747	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969471	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969948	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12177981	0.83[EUR][1000 genomes]
rs12661972	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1299293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340664	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1340665	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1340667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342831	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1417391	0.81[JPT][hapmap]
rs16869492	0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16884835	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16884943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16885091	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs17755305	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17755375	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17828437	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1856829	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1935839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275769	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2275770	0.88[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2754794	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2754802	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2792630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792636	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792638	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792646	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28847288	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41530746	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs4329099	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715443	0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55689719	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55760696	0.96[EUR][1000 genomes]
rs59132111	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924913	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6934602	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6934690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73741487	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7751241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283919	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296742	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464027	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464028	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464030	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464034	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464042	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464043	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464045	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464046	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9474748	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474755	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474762	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474765	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474766	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474768	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474771	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474772	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474773	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9474774	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9885975	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9942457	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1851754	chr6:53989526-54050219	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv823699	chr6:54038268-54047656	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54045400-54048400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
4	chr6:54046000-54051600	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:54046400-54047400	Genic enhancers	Left Ventricle	heart
6	chr6:54046400-54047400	Strong transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:54046800-54047200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:54046800-54047200	Enhancers	Right Ventricle	heart
9	chr6:54046800-54047400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links