Variant report

Variant	rs9464047
Chromosome Location	chr6:54119064-54119065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10080252	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10155669	0.80[ASN][1000 genomes]
rs10484647	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10484648	0.80[EUR][1000 genomes]
rs10484649	0.80[EUR][1000 genomes]
rs10948803	0.86[ASN][1000 genomes]
rs11963558	0.80[EUR][1000 genomes]
rs11966090	0.80[EUR][1000 genomes]
rs11966747	0.80[EUR][1000 genomes]
rs11969948	0.80[EUR][1000 genomes]
rs12177981	0.82[EUR][1000 genomes]
rs12661972	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1340664	0.82[ASN][1000 genomes]
rs1340665	0.80[ASN][1000 genomes]
rs1342831	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16869492	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884761	0.80[EUR][1000 genomes]
rs16884835	0.80[EUR][1000 genomes]
rs16884943	0.80[EUR][1000 genomes]
rs16884946	0.80[EUR][1000 genomes]
rs16885091	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17755305	0.80[EUR][1000 genomes]
rs17755375	0.82[ASN][1000 genomes]
rs17828437	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1856829	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275769	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2275770	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2792646	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41530746	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4329099	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715443	0.80[EUR][1000 genomes]
rs55689719	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55760696	0.80[EUR][1000 genomes]
rs59132111	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924913	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934602	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73741487	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9283919	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296742	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464028	0.80[EUR][1000 genomes]
rs9464034	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9464042	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464043	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464045	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464046	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474762	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474765	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474766	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474768	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474771	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474772	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474773	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474774	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9474775	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885975	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9942457	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54101000-54119800	Weak transcription	Right Ventricle	heart
2	chr6:54101400-54120800	Weak transcription	Psoas Muscle	Psoas
3	chr6:54102200-54119800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:54104000-54119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54104200-54120800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:54109800-54119600	Weak transcription	Fetal Heart	heart
7	chr6:54112800-54121000	Weak transcription	Left Ventricle	heart

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