Variant report

Variant	rs9395918
Chromosome Location	chr6:54104166-54104167
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10080252	0.83[ASN][1000 genomes]
rs10456172	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1074639	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10948803	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1150874	0.81[ASN][1000 genomes]
rs11757700	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12661972	0.83[ASN][1000 genomes]
rs1342831	0.83[ASN][1000 genomes]
rs1417389	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1575220	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869492	0.83[ASN][1000 genomes]
rs16885091	0.83[ASN][1000 genomes]
rs1856829	0.83[ASN][1000 genomes]
rs2145758	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2180931	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2185505	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275769	0.83[ASN][1000 genomes]
rs2275770	0.83[ASN][1000 genomes]
rs34961553	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4329099	0.83[ASN][1000 genomes]
rs4712059	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55689719	0.83[ASN][1000 genomes]
rs59132111	0.83[ASN][1000 genomes]
rs62397397	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458988	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6458989	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924913	0.83[ASN][1000 genomes]
rs6932559	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934602	0.83[ASN][1000 genomes]
rs6937413	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73741487	0.83[ASN][1000 genomes]
rs7740331	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816382	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816383	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816384	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs816385	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9283919	0.83[ASN][1000 genomes]
rs9296740	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296741	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296742	0.83[ASN][1000 genomes]
rs9296743	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9395916	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464042	0.83[ASN][1000 genomes]
rs9464043	0.83[ASN][1000 genomes]
rs9464045	0.83[ASN][1000 genomes]
rs9464046	0.83[ASN][1000 genomes]
rs9474762	0.83[ASN][1000 genomes]
rs9474765	0.83[ASN][1000 genomes]
rs9474766	0.83[ASN][1000 genomes]
rs9474768	0.83[ASN][1000 genomes]
rs9474771	0.83[ASN][1000 genomes]
rs9474772	0.83[ASN][1000 genomes]
rs9474773	0.83[ASN][1000 genomes]
rs9474774	0.83[ASN][1000 genomes]
rs9885975	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54101000-54119800	Weak transcription	Right Ventricle	heart
2	chr6:54101400-54120800	Weak transcription	Psoas Muscle	Psoas
3	chr6:54102000-54104200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:54102200-54119800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:54102600-54108400	Weak transcription	Left Ventricle	heart
6	chr6:54103400-54104200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:54104000-54107000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:54104000-54108600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:54104000-54108600	Weak transcription	Fetal Heart	heart
10	chr6:54104000-54108800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:54104000-54119800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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