Variant report

Variant	rs12665923
Chromosome Location	chr7:147305599-147305600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10226112	0.84[EUR][1000 genomes]
rs10226376	0.84[EUR][1000 genomes]
rs10226389	0.84[EUR][1000 genomes]
rs10227024	0.83[EUR][1000 genomes]
rs10227408	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10227633	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10236087	0.84[EUR][1000 genomes]
rs10237202	0.84[EUR][1000 genomes]
rs10240182	0.84[EUR][1000 genomes]
rs10243306	0.84[EUR][1000 genomes]
rs10244825	0.84[EUR][1000 genomes]
rs10245208	0.84[EUR][1000 genomes]
rs10246304	0.84[EUR][1000 genomes]
rs10248888	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10250480	0.84[EUR][1000 genomes]
rs10251903	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10253397	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10255433	0.84[EUR][1000 genomes]
rs10259411	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10262765	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10269768	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10275373	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10275604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10279095	0.80[EUR][1000 genomes]
rs10280326	0.83[EUR][1000 genomes]
rs10281966	0.84[EUR][1000 genomes]
rs10952697	0.83[EUR][1000 genomes]
rs10952703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1157300	0.82[EUR][1000 genomes]
rs1157301	0.83[EUR][1000 genomes]
rs1157302	0.82[EUR][1000 genomes]
rs11773848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12666239	0.83[EUR][1000 genomes]
rs12674060	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051873	0.80[EUR][1000 genomes]
rs2051875	0.83[EUR][1000 genomes]
rs2107858	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2107859	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2107860	0.84[EUR][1000 genomes]
rs2107861	0.83[EUR][1000 genomes]
rs2158640	0.84[EUR][1000 genomes]
rs2189998	0.83[EUR][1000 genomes]
rs2189999	0.82[EUR][1000 genomes]
rs2373103	0.84[EUR][1000 genomes]
rs2373104	0.84[EUR][1000 genomes]
rs28654757	0.82[EUR][1000 genomes]
rs34024465	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5003024	0.82[EUR][1000 genomes]
rs6464826	0.84[EUR][1000 genomes]
rs6464827	0.84[EUR][1000 genomes]
rs6464828	0.84[EUR][1000 genomes]
rs6464829	0.84[EUR][1000 genomes]
rs6464830	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6464831	0.87[EUR][1000 genomes]
rs6943922	0.83[EUR][1000 genomes]
rs6947921	0.83[EUR][1000 genomes]
rs6947944	0.82[EUR][1000 genomes]
rs6952159	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6954225	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6959784	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6963584	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6967042	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6967525	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6967698	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6967857	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6973502	0.82[EUR][1000 genomes]
rs6975276	0.83[EUR][1000 genomes]
rs6977034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727640	0.83[EUR][1000 genomes]
rs727641	0.84[EUR][1000 genomes]
rs7459220	0.84[EUR][1000 genomes]
rs7780313	0.83[EUR][1000 genomes]
rs7780913	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7781205	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7781408	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7781600	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7783132	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7796991	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7797645	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7797918	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7799324	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7802526	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7805454	0.84[EUR][1000 genomes]
rs7805615	0.84[EUR][1000 genomes]
rs7807559	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7811105	0.83[EUR][1000 genomes]
rs985828	0.80[EUR][1000 genomes]
rs985829	0.83[EUR][1000 genomes]
rs989241	0.82[EUR][1000 genomes]
rs989242	0.82[EUR][1000 genomes]
rs989243	0.83[EUR][1000 genomes]
rs995890	0.84[EUR][1000 genomes]
rs995891	0.84[EUR][1000 genomes]
rs995892	0.84[EUR][1000 genomes]
rs995893	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147298000-147307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147303200-147305800	Enhancers	HUES6 Cell Line	embryonic stem cell

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