Variant report

Variant	rs6959784
Chromosome Location	chr7:147295683-147295684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10226013	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs10226112	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10226255	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap]
rs10226376	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10226389	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10226499	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10227024	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10227408	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10227633	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10229748	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10236087	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10237202	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10240182	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10243306	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244311	0.96[CEU][hapmap]
rs10244661	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap]
rs10244825	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245208	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10246304	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10248888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250480	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10251903	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10253397	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10254989	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs10255433	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10259411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10264004	0.84[CEU][hapmap]
rs10269768	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10275604	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10280326	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10281966	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10952697	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10952703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1157300	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1157301	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1157302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11773848	1.00[CEU][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12056020	0.89[ASN][1000 genomes]
rs12532801	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs12532853	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs12534582	0.95[CEU][hapmap];0.94[JPT][hapmap]
rs12539891	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs12665923	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12666239	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12669822	0.83[EUR][1000 genomes]
rs12671745	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs12674060	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2051873	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2051875	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074713	0.84[CEU][hapmap]
rs2107858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107860	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2107861	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2158640	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2189998	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2189999	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373103	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28654757	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34024465	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41354149	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5003022	0.83[EUR][1000 genomes]
rs5003023	0.83[EUR][1000 genomes]
rs5003024	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6464824	0.84[CEU][hapmap]
rs6464826	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6464827	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6464828	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6464829	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6464830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464831	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6943922	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6943947	0.83[EUR][1000 genomes]
rs6947921	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6947944	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6949493	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6952159	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6954225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963584	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967042	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967426	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6967525	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967698	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6967780	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs6967857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6973502	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6975276	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6977034	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs727639	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs727640	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs727641	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7459220	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780313	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780913	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781205	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781408	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781600	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7783132	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796991	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797645	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802526	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805454	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7805615	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7807559	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7811105	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs929353	0.84[CEU][hapmap]
rs985828	0.87[EUR][1000 genomes]
rs985829	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988041	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs988042	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs989241	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs989242	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs989243	0.96[CEU][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995890	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995891	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995892	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995893	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6959784	OR2F2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147284400-147297600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:147295600-147296000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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