Variant report

Variant	rs988042
Chromosome Location	chr7:147310607-147310608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10226013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10226112	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10226255	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10226376	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10226389	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10226499	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10227024	0.87[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10227408	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10227633	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10236087	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10237202	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10240182	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs10243306	0.83[EUR][1000 genomes]
rs10244311	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10244661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10244825	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10245208	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10246304	0.83[EUR][1000 genomes]
rs10248888	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10250480	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10251903	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10253397	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10254989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10255433	0.88[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10259411	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10262765	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10264004	0.81[CEU][hapmap]
rs10269768	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10275373	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10275604	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280326	0.82[EUR][1000 genomes]
rs10281966	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs10952697	0.82[EUR][1000 genomes]
rs10952703	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1157300	0.81[EUR][1000 genomes]
rs1157301	0.87[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs1157302	0.96[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs11773848	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12532801	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12532853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12534582	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs12539891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12665923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12666239	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs12671745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12674060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051875	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs2074713	0.81[CEU][hapmap]
rs2107858	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107859	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2107860	0.83[EUR][1000 genomes]
rs2107861	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs2158640	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs2189998	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs2189999	0.92[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs2373103	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs2373104	0.95[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs28654757	0.81[EUR][1000 genomes]
rs34024465	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41354149	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs5003024	0.92[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs6464824	0.81[CEU][hapmap]
rs6464826	0.83[EUR][1000 genomes]
rs6464827	0.83[EUR][1000 genomes]
rs6464828	0.83[EUR][1000 genomes]
rs6464829	0.83[EUR][1000 genomes]
rs6464830	0.96[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6464831	0.86[EUR][1000 genomes]
rs6943922	0.82[EUR][1000 genomes]
rs6947921	0.82[EUR][1000 genomes]
rs6947944	0.81[EUR][1000 genomes]
rs6952159	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954225	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6959784	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6963584	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6967042	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6967426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6967525	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6967698	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6967780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6967857	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6973502	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs6975276	0.87[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs6977034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727639	0.84[CEU][hapmap]
rs727640	0.82[EUR][1000 genomes]
rs727641	0.83[EUR][1000 genomes]
rs7459220	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs7780313	0.82[EUR][1000 genomes]
rs7780913	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7781205	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7781408	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7781600	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7783132	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7796991	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7797645	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7797918	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7799324	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7802526	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7805454	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs7805615	0.86[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs7807559	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7811105	0.82[EUR][1000 genomes]
rs929353	0.81[CEU][hapmap]
rs985829	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs988041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs989241	0.92[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs989242	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs989243	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs995890	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs995891	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs995892	0.92[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs995893	0.88[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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