Variant report

Variant	rs727639
Chromosome Location	chr7:147282250-147282251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10226013	0.84[CEU][hapmap]
rs10226112	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10226255	0.84[CEU][hapmap]
rs10226376	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10226389	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10226499	0.88[CEU][hapmap]
rs10227024	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10236087	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10237202	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10240182	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs10243306	0.82[EUR][1000 genomes]
rs10244311	0.87[CEU][hapmap]
rs10244661	0.84[CEU][hapmap]
rs10244825	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10245208	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10246304	0.82[EUR][1000 genomes]
rs10248888	0.88[CEU][hapmap]
rs10250480	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10254989	0.84[CEU][hapmap]
rs10255433	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10259411	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs10269768	0.88[CEU][hapmap]
rs10275373	0.88[CEU][hapmap]
rs10275604	0.88[CEU][hapmap]
rs10280326	0.81[EUR][1000 genomes]
rs10281966	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10952697	0.81[EUR][1000 genomes]
rs10952703	0.88[CEU][hapmap]
rs1157300	0.80[EUR][1000 genomes]
rs1157301	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1157302	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11773848	0.88[CEU][hapmap]
rs12532801	0.84[CEU][hapmap]
rs12532853	0.84[CEU][hapmap]
rs12534582	0.82[CEU][hapmap]
rs12539891	0.84[CEU][hapmap]
rs12666239	0.92[CEU][hapmap]
rs12671745	0.81[CEU][hapmap]
rs2051875	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2107858	0.95[CEU][hapmap]
rs2107859	0.87[CEU][hapmap]
rs2107860	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2107861	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2158640	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2189998	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2189999	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs2373103	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2373104	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28654757	0.80[EUR][1000 genomes]
rs41354149	0.88[CEU][hapmap]
rs5003024	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs6464826	0.82[EUR][1000 genomes]
rs6464827	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6464828	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6464829	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6464830	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs6943922	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6947921	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6947944	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6954225	0.88[CEU][hapmap]
rs6959784	0.88[CEU][hapmap];0.82[GIH][hapmap]
rs6963584	0.92[CEU][hapmap]
rs6967426	0.84[CEU][hapmap]
rs6967780	0.84[CEU][hapmap]
rs6967857	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs6973502	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs6975276	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6979099	0.88[CEU][hapmap]
rs727640	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs727641	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7459220	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7780313	0.81[EUR][1000 genomes]
rs7783132	0.87[CEU][hapmap]
rs7796991	0.84[CEU][hapmap]
rs7799324	0.91[CEU][hapmap]
rs7802526	0.91[CEU][hapmap]
rs7805454	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7805615	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs7811105	0.81[EUR][1000 genomes]
rs985829	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs988041	0.84[CEU][hapmap]
rs988042	0.84[CEU][hapmap]
rs989241	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs989242	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs989243	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs995890	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs995891	0.91[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs995892	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs995893	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv19066	chr7:147271448-147285044	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv1824789	chr7:147277640-147294703	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv608955	chr7:147279175-147282327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv608956	chr7:147279175-147283018	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv608957	chr7:147279175-147283342	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv608958	chr7:147279947-147282327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv608959	chr7:147280000-147283018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv608960	chr7:147280317-147283018	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv608961	chr7:147281796-147284351	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv608962	chr7:147281796-147284352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3420900	chr7:147282169-147283417	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147268000-147283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147278400-147283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:147281000-147282400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:147281000-147284400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:147281400-147284800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:147281400-147284800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:147281600-147282400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:147281600-147284600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:147281800-147283000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:147282200-147283000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:147282200-147283000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:147282200-147283000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:147282200-147283600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:147282200-147283600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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