Variant report

Variant	rs6979099
Chromosome Location	chr7:147270639-147270640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226112	0.81[CEU][hapmap]
rs10226376	0.81[CEU][hapmap]
rs10226389	0.81[CEU][hapmap]
rs10236087	0.81[CEU][hapmap]
rs10237202	0.81[CEU][hapmap]
rs10244825	0.81[CEU][hapmap]
rs10250480	0.81[CEU][hapmap]
rs10264004	0.92[CEU][hapmap]
rs10281966	0.81[CEU][hapmap]
rs12666239	0.81[CEU][hapmap]
rs2051875	0.83[CEU][hapmap]
rs2074713	0.92[CEU][hapmap]
rs2074714	0.87[CEU][hapmap]
rs2107861	0.81[CEU][hapmap]
rs2158640	0.81[CEU][hapmap]
rs2189998	0.81[CEU][hapmap]
rs2189999	0.81[CEU][hapmap]
rs2373104	0.82[CEU][hapmap]
rs5003024	0.81[CEU][hapmap]
rs6464824	0.92[CEU][hapmap]
rs6944808	0.83[CEU][hapmap]
rs6963584	0.81[CEU][hapmap]
rs727639	0.88[CEU][hapmap]
rs7805454	0.81[CEU][hapmap]
rs851824	0.84[CEU][hapmap]
rs851826	0.83[CEU][hapmap]
rs851828	0.83[CEU][hapmap]
rs929353	0.92[CEU][hapmap]
rs985829	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147267400-147271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:147268000-147271200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:147268000-147277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:147268000-147283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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