Variant report

Variant	rs12666211
Chromosome Location	chr7:80109838-80109839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10229347	0.94[ASN][1000 genomes]
rs10242727	0.99[ASN][1000 genomes]
rs10246832	0.99[ASN][1000 genomes]
rs10269846	0.96[ASN][1000 genomes]
rs10270318	0.96[ASN][1000 genomes]
rs10280807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404314	0.90[ASN][1000 genomes]
rs1404315	0.90[ASN][1000 genomes]
rs1524600	0.93[ASN][1000 genomes]
rs6467192	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6467217	0.93[ASN][1000 genomes]
rs6961082	0.91[ASN][1000 genomes]
rs6970109	0.93[ASN][1000 genomes]
rs6975345	0.96[ASN][1000 genomes]
rs6979450	0.93[ASN][1000 genomes]
rs73369038	0.94[ASN][1000 genomes]
rs73369078	0.96[ASN][1000 genomes]
rs7776757	0.93[ASN][1000 genomes]
rs7777640	0.90[ASN][1000 genomes]
rs7779247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7780776	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7786144	0.93[ASN][1000 genomes]
rs7800673	0.93[ASN][1000 genomes]
rs7802311	0.99[ASN][1000 genomes]
rs7804604	0.94[ASN][1000 genomes]
rs7808426	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888523	chr7:80088592-80142217	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv607680	chr7:80097576-80142217	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80096800-80113000	Enhancers	Hela-S3	cervix
2	chr7:80102400-80110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:80102400-80110000	Weak transcription	Left Ventricle	heart
4	chr7:80103200-80110000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:80104600-80110200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:80106000-80110000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:80106000-80110200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:80106200-80110000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:80107400-80110200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:80107400-80112200	Weak transcription	Right Atrium	heart
11	chr7:80107600-80111600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:80108400-80110000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:80108400-80110000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:80108400-80110200	Weak transcription	Osteobl	bone
15	chr7:80108400-80116200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:80108600-80110200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:80108600-80110200	Enhancers	Placenta	Placenta
18	chr7:80108600-80110400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:80109000-80110000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:80109400-80110400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:80109400-80111600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:80109400-80113000	Enhancers	HMEC	breast
23	chr7:80109600-80110200	Enhancers	Adipose Nuclei	Adipose
24	chr7:80109600-80111000	Enhancers	NH-A	brain
25	chr7:80109600-80113200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:80109600-80113200	Enhancers	NHEK	skin
27	chr7:80109800-80110200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:80109800-80110200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:80109800-80111200	Enhancers	A549	lung
30	chr7:80109800-80111400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:80109800-80113200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:80109800-80113200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links