Variant report

Variant	rs1404314
Chromosome Location	chr7:80134355-80134356
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80130973..80133838-chr7:80134281..80135849,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10216027	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10229347	0.87[ASN][1000 genomes]
rs10242727	0.91[ASN][1000 genomes]
rs10246832	0.91[ASN][1000 genomes]
rs10269301	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10269846	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10270318	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10273230	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10276559	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10279893	0.93[EUR][1000 genomes]
rs10280109	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10280807	0.90[ASN][1000 genomes]
rs12535970	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12536759	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12666211	0.90[ASN][1000 genomes]
rs1404315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524600	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34193549	0.82[EUR][1000 genomes]
rs59419187	0.94[EUR][1000 genomes]
rs6467192	0.87[ASN][1000 genomes]
rs6467212	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6467217	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961082	0.81[ASN][1000 genomes]
rs6970109	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6975345	0.94[ASN][1000 genomes]
rs6979450	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73369038	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73369078	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73709182	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776757	0.97[ASN][1000 genomes]
rs7777640	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7779247	0.86[ASN][1000 genomes]
rs7780776	0.87[ASN][1000 genomes]
rs7786144	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7800673	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7802311	0.91[ASN][1000 genomes]
rs7804604	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7808426	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888523	chr7:80088592-80142217	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv607680	chr7:80097576-80142217	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv464604	chr7:80121347-80142217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv607681	chr7:80121347-80142217	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1801415	chr7:80130554-80149152	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80129200-80147800	Weak transcription	Left Ventricle	heart
2	chr7:80130000-80137000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:80130600-80136800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links