Variant report

Variant	rs73709182
Chromosome Location	chr7:80126554-80126555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80125854..80128249-chr7:80143744..80146199,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10216027	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269301	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269846	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10270318	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10273230	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276559	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279893	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10280109	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769919	0.93[ASN][1000 genomes]
rs12535970	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12536759	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666914	0.93[ASN][1000 genomes]
rs1404314	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1404315	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1524600	0.95[EUR][1000 genomes]
rs17154074	0.89[ASN][1000 genomes]
rs17154083	0.89[ASN][1000 genomes]
rs17154086	0.89[ASN][1000 genomes]
rs2177617	0.89[ASN][1000 genomes]
rs34193549	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59229896	0.89[ASN][1000 genomes]
rs59419187	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467212	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467217	0.95[EUR][1000 genomes]
rs6946786	0.89[ASN][1000 genomes]
rs6970109	0.95[EUR][1000 genomes]
rs6970260	0.89[ASN][1000 genomes]
rs6979450	0.95[EUR][1000 genomes]
rs73369038	0.96[EUR][1000 genomes]
rs73369078	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73709192	0.89[ASN][1000 genomes]
rs73709197	0.89[ASN][1000 genomes]
rs7777640	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7786144	0.95[EUR][1000 genomes]
rs7800673	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7804604	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888523	chr7:80088592-80142217	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv607680	chr7:80097576-80142217	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv464604	chr7:80121347-80142217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv607681	chr7:80121347-80142217	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80113000-80127800	Weak transcription	Hela-S3	cervix
2	chr7:80118600-80127400	Weak transcription	NHEK	skin
3	chr7:80120600-80128000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:80121400-80128400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:80121400-80128400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:80123000-80127400	Weak transcription	NHDF-Ad	bronchial
7	chr7:80125600-80127400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:80125600-80128400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:80125800-80128200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:80126000-80129800	Enhancers	Osteobl	bone
11	chr7:80126000-80130600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:80126200-80127400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:80126200-80127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:80126200-80130000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:80126200-80130000	Enhancers	NHLF	lung
16	chr7:80126200-80130400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:80126400-80126600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:80126400-80126600	Enhancers	NH-A	brain
19	chr7:80126400-80127600	Weak transcription	A549	lung
20	chr7:80126400-80128200	Enhancers	HSMMtube	muscle

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