Variant report

Variant	rs12667517
Chromosome Location	chr7:150303716-150303717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12667030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12667452	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12667483	0.87[ASN][1000 genomes]
rs12667555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12668363	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12669775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12671748	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12671799	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12673369	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12673373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13307919	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35279979	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35651208	0.92[AMR][1000 genomes]
rs35817320	0.92[AMR][1000 genomes]
rs56211450	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60035597	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60335270	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6942506	0.92[AMR][1000 genomes]
rs6944535	0.81[ASN][1000 genomes]
rs6945074	0.81[ASN][1000 genomes]
rs6949777	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964548	0.81[ASN][1000 genomes]
rs6967987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6968053	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6977469	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73464657	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73464673	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73473389	0.92[AMR][1000 genomes]
rs73727350	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73727354	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7785484	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7789840	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7804508	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9769812	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv16529	chr7:150249312-150312843	Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv13954	chr7:150292485-150307048	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv511998	chr7:150299281-150306979	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3366219	chr7:150299819-150305317	Flanking Active TSS Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1005919	chr7:150299834-150306808	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3431995	chr7:150299969-150305067	Weak transcription Flanking Active TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3323446	chr7:150300519-150305817	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3478099	chr7:150301015-150306447	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3370296	chr7:150301025-150306446	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3478100	chr7:150301029-150306444	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv436546	chr7:150301057-150308010	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv970607	chr7:150301369-150311530	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150300600-150316800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:150301000-150307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:150301200-150307000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:150301400-150307000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:150302200-150307000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:150302600-150303800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr7:150302600-150309400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:150303000-150306800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr7:150303200-150303800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:150303600-150304800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:150303600-150307800	Weak transcription	Primary T cells from cord blood	blood

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