Variant report

Variant	rs12669003
Chromosome Location	chr7:120492698-120492699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120492091..120494339-chr7:120499581..120501405,2	K562	blood:
2	chr7:120490293..120494188-chr7:120496903..120500277,5	MCF-7	breast:
3	chr7:120491569..120493974-chr7:120494829..120497807,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106025	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73425871	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv5929	chr7:120467591-120513472	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120445200-120494400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:120474000-120496400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:120474600-120496600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:120477200-120496200	Weak transcription	Aorta	Aorta
5	chr7:120479600-120494000	Weak transcription	HUVEC	blood vessel
6	chr7:120482600-120495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:120482600-120496200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:120482800-120496400	Weak transcription	Liver	Liver
9	chr7:120482800-120496400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:120482800-120496600	Weak transcription	Stomach Mucosa	stomach
11	chr7:120483400-120496200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:120483400-120496400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:120483600-120496600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:120485000-120493800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:120485200-120496200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:120485200-120496200	Weak transcription	Fetal Stomach	stomach
17	chr7:120485200-120496600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:120485200-120496600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:120485400-120496400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:120485400-120496400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:120487600-120495000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:120488200-120494800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:120488200-120496200	Weak transcription	Fetal Intestine Small	intestine
24	chr7:120488200-120496600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:120488200-120496600	Weak transcription	Colonic Mucosa	Colon
26	chr7:120488400-120492800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:120488400-120496000	Weak transcription	Fetal Kidney	kidney
28	chr7:120488400-120496200	Weak transcription	Right Ventricle	heart
29	chr7:120488600-120495200	Weak transcription	Fetal Intestine Large	intestine
30	chr7:120489200-120496200	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:120489400-120495600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:120490200-120495800	Weak transcription	Left Ventricle	heart
33	chr7:120490400-120492800	Weak transcription	GM12878-XiMat	blood
34	chr7:120490600-120494200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:120490600-120495800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:120490600-120496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:120490600-120496800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr7:120492000-120495200	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:120492200-120492800	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr7:120492400-120492800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr7:120492400-120492800	Enhancers	Fetal Lung	lung
42	chr7:120492400-120492800	Enhancers	Gastric	stomach
43	chr7:120492400-120493000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:120492400-120493000	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr7:120492400-120493000	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr7:120492400-120493000	Enhancers	Fetal Heart	heart
47	chr7:120492600-120492800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr7:120492600-120492800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
49	chr7:120492600-120494200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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