Variant report

Variant	rs73425871
Chromosome Location	chr7:120430808-120430809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120424472..120426112-chr7:120429609..120431821,2	K562	blood:
2	chr7:120429497..120433705-chr7:120588481..120592283,5	MCF-7	breast:
3	chr7:120426535..120428741-chr7:120429958..120433038,3	K562	blood:

Variant related genes	Relation type
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs114420	0.85[ASN][1000 genomes]
rs12669003	0.92[ASN][1000 genomes]
rs2189974	0.85[ASN][1000 genomes]
rs73429842	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120423000-120449200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:120425600-120433200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:120425600-120434400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:120425600-120434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:120425800-120432400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:120425800-120434800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:120425800-120437600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:120426000-120432000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:120426200-120432000	Weak transcription	Fetal Heart	heart
12	chr7:120426400-120431200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:120426600-120442000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:120426800-120432200	Weak transcription	Fetal Intestine Large	intestine
15	chr7:120427400-120432200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
17	chr7:120427800-120432000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:120427800-120432400	Weak transcription	Fetal Kidney	kidney
19	chr7:120427800-120438400	Weak transcription	Aorta	Aorta
20	chr7:120428400-120440400	Weak transcription	Fetal Intestine Small	intestine
21	chr7:120429200-120432400	Weak transcription	Gastric	stomach
22	chr7:120429200-120445600	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:120429400-120434000	Weak transcription	Left Ventricle	heart
24	chr7:120429400-120437200	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:120429600-120432200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:120430200-120432000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:120430200-120437200	Weak transcription	Liver	Liver
28	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum

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