Variant report

Variant	rs12669371
Chromosome Location	chr7:15990343-15990344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10486783	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10486786	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11980623	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12666423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12673932	0.83[AMR][1000 genomes]
rs12674322	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1406100	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169154	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4382357	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58428788	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60024014	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60774259	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61121193	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15987800-15994200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:15988000-15994000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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