Variant report

Variant	rs17169154
Chromosome Location	chr7:15960361-15960362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10486783	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10486786	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980623	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984407	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12666423	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12669371	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12674322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406100	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169117	0.80[EUR][1000 genomes]
rs4382357	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58428788	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60024014	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60774259	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61121193	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15956000-15961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:15956800-15961000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:15957000-15961000	Weak transcription	NHLF	lung
4	chr7:15957200-15960800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:15957200-15960800	Weak transcription	NH-A	brain
6	chr7:15957400-15960600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:15957600-15960600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:15957600-15961000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:15957600-15961000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:15957800-15960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:15958000-15960600	Weak transcription	NHDF-Ad	bronchial
12	chr7:15958000-15960600	Weak transcription	Osteobl	bone
13	chr7:15960200-15960400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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