Variant report

Variant	rs12669760
Chromosome Location	chr7:18630293-18630294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18630127..18630658-chr7:18705450..18706373,2	MCF-7	breast:
2	chr7:18630158..18631096-chr7:19704896..19705753,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1089359	0.86[CHB][hapmap]
rs1726610	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2519891	0.94[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:18611600-18633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:18613200-18633200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:18613600-18633200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:18614200-18633200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:18614600-18631200	Weak transcription	Fetal Stomach	stomach
7	chr7:18614600-18633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:18614600-18640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:18614600-18640400	Weak transcription	Spleen	Spleen
10	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:18617000-18640400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
13	chr7:18620800-18633200	Weak transcription	Adipose Nuclei	Adipose
14	chr7:18621000-18631200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:18621000-18633400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:18621000-18640800	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:18621000-18641200	Weak transcription	Right Ventricle	heart
18	chr7:18621200-18638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:18621200-18640200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:18621200-18646800	Weak transcription	HSMM	muscle
21	chr7:18621400-18639000	Weak transcription	Fetal Brain Female	brain
22	chr7:18621400-18641000	Weak transcription	Brain Anterior Caudate	brain
23	chr7:18621600-18633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:18621800-18633000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:18621800-18643600	Weak transcription	Brain Germinal Matrix	brain
26	chr7:18622000-18641000	Weak transcription	Brain Substantia Nigra	brain
27	chr7:18622600-18638400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:18623000-18631200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:18623400-18631200	Weak transcription	NH-A	brain
30	chr7:18623600-18631200	Weak transcription	Aorta	Aorta
31	chr7:18623800-18633200	Weak transcription	HSMMtube	muscle
32	chr7:18623800-18640200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:18624200-18633400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:18625400-18633200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:18625400-18633200	Weak transcription	Left Ventricle	heart
36	chr7:18625400-18636400	Weak transcription	Fetal Heart	heart
37	chr7:18627400-18639200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:18628000-18640800	Weak transcription	HMEC	breast
39	chr7:18628400-18633400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:18628600-18640400	Weak transcription	NHEK	skin
41	chr7:18629400-18631200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:18629400-18637800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:18629600-18630400	Genic enhancers	Primary B cells from peripheral blood	blood
44	chr7:18629600-18635000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:18629800-18630400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:18630000-18630400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:18630000-18630400	Active TSS	NHDF-Ad	bronchial
48	chr7:18630000-18631600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:18630000-18638600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:18630000-18640400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links