Variant report

Variant	rs2519891
Chromosome Location	chr7:18632130-18632131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10243224	1.00[YRI][hapmap]
rs12669760	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs3807909	1.00[YRI][hapmap]
rs3807919	1.00[YRI][hapmap]
rs3807922	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18611600-18633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:18613200-18633200	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:18613600-18633200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:18614200-18633200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:18614600-18633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:18614600-18640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:18614600-18640400	Weak transcription	Spleen	Spleen
8	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:18617000-18640400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
11	chr7:18620800-18633200	Weak transcription	Adipose Nuclei	Adipose
12	chr7:18621000-18633400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:18621000-18640800	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:18621000-18641200	Weak transcription	Right Ventricle	heart
15	chr7:18621200-18638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:18621200-18640200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:18621200-18646800	Weak transcription	HSMM	muscle
18	chr7:18621400-18639000	Weak transcription	Fetal Brain Female	brain
19	chr7:18621400-18641000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:18621600-18633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:18621800-18633000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:18621800-18643600	Weak transcription	Brain Germinal Matrix	brain
23	chr7:18622000-18641000	Weak transcription	Brain Substantia Nigra	brain
24	chr7:18622600-18638400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:18623800-18633200	Weak transcription	HSMMtube	muscle
26	chr7:18623800-18640200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:18624200-18633400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:18625400-18633200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:18625400-18633200	Weak transcription	Left Ventricle	heart
30	chr7:18625400-18636400	Weak transcription	Fetal Heart	heart
31	chr7:18627400-18639200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:18628000-18640800	Weak transcription	HMEC	breast
33	chr7:18628400-18633400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:18628600-18640400	Weak transcription	NHEK	skin
35	chr7:18629400-18637800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:18629600-18635000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr7:18630000-18638600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:18630000-18640400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:18630200-18633200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:18630200-18633200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:18630200-18633800	Strong transcription	Primary B cells from cord blood	blood
42	chr7:18630200-18636200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:18630200-18640000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:18630200-18640400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr7:18630400-18632800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr7:18630400-18633000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:18630400-18635400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:18630400-18640000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr7:18630600-18637400	Weak transcription	NHDF-Ad	bronchial
50	chr7:18630600-18640400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links