Variant report

Variant	rs3807919
Chromosome Location	chr7:18610797-18610798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18391676..18392589-chr7:18610144..18611124,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243224	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17139319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139344	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17139401	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1980366	0.80[ASN][1000 genomes]
rs2519891	1.00[YRI][hapmap]
rs3807909	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3807915	0.80[ASN][1000 genomes]
rs3807922	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv516893	chr7:18601365-18614519	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18581600-18620200	Weak transcription	HSMMtube	muscle
2	chr7:18596800-18612600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:18598600-18613000	Weak transcription	Spleen	Spleen
4	chr7:18599000-18613200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:18599000-18613200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:18600400-18613200	Weak transcription	Right Ventricle	heart
7	chr7:18600600-18613200	Weak transcription	Left Ventricle	heart
8	chr7:18600600-18617600	Weak transcription	Psoas Muscle	Psoas
9	chr7:18601600-18613800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:18605000-18613000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:18605200-18612400	Weak transcription	Brain Angular Gyrus	brain
12	chr7:18605200-18613000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:18605200-18613000	Weak transcription	Right Atrium	heart
14	chr7:18605400-18620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:18606800-18610800	Weak transcription	Aorta	Aorta
16	chr7:18606800-18613000	Weak transcription	Gastric	stomach
17	chr7:18606800-18613200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr7:18606800-18616000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:18606800-18616800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:18606800-18620600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:18607000-18611400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:18607000-18614400	Weak transcription	HMEC	breast
24	chr7:18607000-18615800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:18607000-18630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:18607200-18611000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:18610200-18610800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:18610200-18611000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr7:18610200-18611000	Enhancers	Brain Substantia Nigra	brain
30	chr7:18610200-18611000	Enhancers	Fetal Brain Female	brain
31	chr7:18610200-18612400	Enhancers	Primary B cells from cord blood	blood
32	chr7:18610200-18613000	Enhancers	Primary B cells from peripheral blood	blood
33	chr7:18610400-18610800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr7:18610400-18610800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:18610400-18610800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:18610400-18611200	Enhancers	Brain Germinal Matrix	brain
37	chr7:18610400-18611600	Enhancers	NHDF-Ad	bronchial
38	chr7:18610400-18611600	Enhancers	Osteobl	bone
39	chr7:18610600-18611600	Weak transcription	Stomach Mucosa	stomach
40	chr7:18610600-18612400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:18610600-18612600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:18610600-18613000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:18610600-18615200	Weak transcription	Fetal Brain Male	brain
44	chr7:18610600-18616400	Weak transcription	Fetal Heart	heart
45	chr7:18610600-18620400	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:18610600-18629800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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