Variant report

Variant	rs12670009
Chromosome Location	chr7:39354412-39354413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7810302	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39350600-39358400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:39350800-39355200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:39353000-39355200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:39353200-39355200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:39353400-39355000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:39353400-39355000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:39353400-39355200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:39353400-39355400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:39353600-39355000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:39353600-39355400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:39353800-39354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:39353800-39355200	Enhancers	Fetal Kidney	kidney
13	chr7:39354200-39354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:39354400-39354800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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