Variant report

Variant	rs12670130
Chromosome Location	chr7:21628197-21628198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21626925..21629100-chr7:21632735..21635113,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10499531	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10950861	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11765753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766898	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11768411	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768728	1.00[CEU][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773760	0.86[EUR][1000 genomes]
rs11978567	0.89[EUR][1000 genomes]
rs12666258	0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12667349	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12668100	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs12669590	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12673164	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17144781	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs17745898	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs35758178	0.88[EUR][1000 genomes]
rs3810898	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3827658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55750845	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55844287	0.89[EUR][1000 genomes]
rs55937657	0.88[EUR][1000 genomes]
rs56106069	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56214809	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56356943	0.87[ASN][1000 genomes]
rs56404110	0.95[ASN][1000 genomes]
rs62441662	0.91[ASN][1000 genomes]
rs62441664	0.90[ASN][1000 genomes]
rs62441665	0.88[ASN][1000 genomes]
rs62441666	0.88[ASN][1000 genomes]
rs62441667	0.91[ASN][1000 genomes]
rs62441668	0.91[ASN][1000 genomes]
rs62441669	0.90[ASN][1000 genomes]
rs62441670	0.92[ASN][1000 genomes]
rs62441672	0.88[ASN][1000 genomes]
rs62441676	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62441677	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62441680	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62441682	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441683	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62441720	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62441726	0.87[EUR][1000 genomes]
rs62447776	0.89[EUR][1000 genomes]
rs62447777	0.89[EUR][1000 genomes]
rs62447778	0.89[EUR][1000 genomes]
rs62447780	0.89[EUR][1000 genomes]
rs62447782	0.89[EUR][1000 genomes]
rs6461585	0.89[EUR][1000 genomes]
rs6461587	0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs6964528	0.91[ASN][1000 genomes]
rs6976617	0.81[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6977909	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73070433	0.95[EUR][1000 genomes]
rs7788355	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[ASN][1000 genomes]
rs7788995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7797362	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7803297	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805701	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7809703	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8180768	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs9638787	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs9639381	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs9639383	0.91[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1030577	chr7:21548909-21681379	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025634	chr7:21566727-21686272	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21626600-21628200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr7:21627000-21628200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr7:21627000-21628600	Enhancers	Primary T cells from cord blood	blood
4	chr7:21627200-21632400	Weak transcription	Pancreas	Pancrea
5	chr7:21627800-21628200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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