Variant report

Variant	rs62441676
Chromosome Location	chr7:21609623-21609624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21608400..21610295-chr7:21656188..21658380,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105877	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10950861	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11763790	0.87[EUR][1000 genomes]
rs11765753	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11766011	0.94[ASN][1000 genomes]
rs11768411	0.88[ASN][1000 genomes]
rs12666258	0.87[ASN][1000 genomes]
rs12667349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12668100	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670130	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3810898	0.90[ASN][1000 genomes]
rs3827658	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55750845	0.87[ASN][1000 genomes]
rs56106069	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56356943	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56404110	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60021305	0.86[EUR][1000 genomes]
rs62439331	0.87[EUR][1000 genomes]
rs62439332	0.87[EUR][1000 genomes]
rs62439333	0.87[EUR][1000 genomes]
rs62439334	0.87[EUR][1000 genomes]
rs62439335	0.87[EUR][1000 genomes]
rs62439336	0.87[EUR][1000 genomes]
rs62441662	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62441664	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62441665	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62441666	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62441667	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62441668	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62441669	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62441670	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441672	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62441677	0.88[ASN][1000 genomes]
rs62441680	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62441682	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62441720	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6461579	0.87[EUR][1000 genomes]
rs6955340	0.93[EUR][1000 genomes]
rs6964528	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973537	0.93[EUR][1000 genomes]
rs6975155	0.87[EUR][1000 genomes]
rs6976617	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6977909	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788355	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788995	0.93[ASN][1000 genomes]
rs7789688	0.86[EUR][1000 genomes]
rs7795069	0.87[EUR][1000 genomes]
rs7801854	0.87[EUR][1000 genomes]
rs7803297	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7805701	0.94[ASN][1000 genomes]
rs7806515	0.86[EUR][1000 genomes]
rs7809703	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1030577	chr7:21548909-21681379	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1025634	chr7:21566727-21686272	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv933452	chr7:21603688-21609638	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21591400-21610600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:21591400-21610600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:21591400-21627000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:21601800-21622600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:21608400-21609800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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