Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1017149	1.00[CEU][hapmap]
rs10228924	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241911	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10259327	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10259937	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10266615	1.00[CEU][hapmap]
rs11974883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080374	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2362596	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2362598	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs2885552	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4498477	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4501511	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515471	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5003961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759424	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783735	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7788276	1.00[EUR][1000 genomes]
rs7796439	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7802125	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7802920	1.00[EUR][1000 genomes]
rs7806209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78067000-78072400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:78067000-78079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:78071000-78073600	Enhancers	Brain Anterior Caudate	brain
4	chr7:78071200-78072800	Enhancers	Brain Angular Gyrus	brain
5	chr7:78071200-78072800	Enhancers	Brain Hippocampus Middle	brain
6	chr7:78071400-78073000	Enhancers	Brain Substantia Nigra	brain
7	chr7:78071400-78073600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:78071600-78072200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:78071600-78072800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:78071600-78073200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:78072000-78072600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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