Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1017149	1.00[CEU][hapmap]
rs10228924	0.94[EUR][1000 genomes]
rs10241911	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10259327	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10259937	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10266615	1.00[CEU][hapmap]
rs11974883	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12670815	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2080374	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2362596	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2885552	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4498477	0.94[EUR][1000 genomes]
rs4501511	0.94[EUR][1000 genomes]
rs4515471	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs5003961	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs759424	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7783735	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7786447	0.82[JPT][hapmap]
rs7788276	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7802125	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7802920	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7806209	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs990527	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78067000-78079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:78072800-78079600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78072800-78079800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78073200-78078400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78073600-78078200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78073600-78079600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78077200-78078200	Enhancers	Fetal Heart	heart
8	chr7:78077400-78078000	Enhancers	Brain Hippocampus Middle	brain

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