Variant report

Variant	rs12671075
Chromosome Location	chr7:80214808-80214809
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1093829	0.84[EUR][1000 genomes]
rs1093830	0.83[EUR][1000 genomes]
rs1093834	0.83[EUR][1000 genomes]
rs11764390	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12155030	0.84[EUR][1000 genomes]
rs1320408	0.84[EUR][1000 genomes]
rs1761645	0.84[EUR][1000 genomes]
rs1761646	0.84[EUR][1000 genomes]
rs1761673	0.86[EUR][1000 genomes]
rs1851934	0.87[EUR][1000 genomes]
rs1851935	0.83[EUR][1000 genomes]
rs1931694	0.82[EUR][1000 genomes]
rs2177616	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2366739	0.87[EUR][1000 genomes]
rs28851188	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28854232	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731606	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467251	0.84[EUR][1000 genomes]
rs6467258	0.86[EUR][1000 genomes]
rs71531176	0.84[EUR][1000 genomes]
rs71531177	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7779873	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7786174	0.84[EUR][1000 genomes]
rs7790259	0.84[EUR][1000 genomes]
rs7793698	0.84[EUR][1000 genomes]
rs7794010	0.84[EUR][1000 genomes]
rs7810280	0.84[EUR][1000 genomes]
rs819443	0.84[EUR][1000 genomes]
rs819456	0.87[ASN][1000 genomes]
rs940542	0.84[EUR][1000 genomes]
rs9649527	0.83[EUR][1000 genomes]
rs9649529	0.84[EUR][1000 genomes]
rs9649532	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1017381	chr7:80187725-80224314	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv525704	chr7:80203718-80236014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80209400-80216800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:80211000-80223200	Weak transcription	Left Ventricle	heart
3	chr7:80212600-80226000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:80213000-80215200	Enhancers	Fetal Intestine Small	intestine
5	chr7:80213200-80215200	Enhancers	Adipose Nuclei	Adipose
6	chr7:80213600-80223600	Weak transcription	Psoas Muscle	Psoas
7	chr7:80213800-80220600	Weak transcription	Fetal Intestine Large	intestine
8	chr7:80214400-80217800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:80214600-80217400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:80214600-80217800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:80214600-80220400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:80214800-80217800	Weak transcription	Fetal Heart	heart
13	chr7:80214800-80223200	Weak transcription	Pancreas	Pancrea

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