Variant report

Variant	rs9649532
Chromosome Location	chr7:80176545-80176546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10233710	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10246970	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249397	0.80[EUR][1000 genomes]
rs10278120	0.80[EUR][1000 genomes]
rs10282644	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1093829	0.90[ASN][1000 genomes]
rs1093830	0.90[ASN][1000 genomes]
rs1093831	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1093833	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1093834	0.90[ASN][1000 genomes]
rs1093835	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11764390	0.85[EUR][1000 genomes]
rs1194195	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1194196	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1194197	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12155030	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12531594	0.81[EUR][1000 genomes]
rs12669206	0.80[EUR][1000 genomes]
rs12671075	0.90[EUR][1000 genomes]
rs1320408	0.88[ASN][1000 genomes]
rs13222156	0.81[EUR][1000 genomes]
rs13222395	0.81[EUR][1000 genomes]
rs13237390	0.81[EUR][1000 genomes]
rs13242267	0.81[EUR][1000 genomes]
rs13245374	0.81[EUR][1000 genomes]
rs1404312	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1464793	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1464794	0.81[EUR][1000 genomes]
rs1524601	0.81[EUR][1000 genomes]
rs1761645	0.88[ASN][1000 genomes]
rs1761646	0.88[ASN][1000 genomes]
rs1761673	0.84[ASN][1000 genomes]
rs1851934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851935	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1931693	0.81[EUR][1000 genomes]
rs1931694	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1965524	0.81[EUR][1000 genomes]
rs1965525	0.81[EUR][1000 genomes]
rs2091178	0.80[EUR][1000 genomes]
rs2091180	0.80[EUR][1000 genomes]
rs2177616	0.92[EUR][1000 genomes]
rs2210684	0.81[EUR][1000 genomes]
rs2366739	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2366741	0.81[EUR][1000 genomes]
rs2781841	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28850277	0.81[EUR][1000 genomes]
rs28851188	0.92[EUR][1000 genomes]
rs28854232	0.92[EUR][1000 genomes]
rs28872565	0.81[EUR][1000 genomes]
rs35136290	0.81[EUR][1000 genomes]
rs4731606	0.92[EUR][1000 genomes]
rs62459940	0.81[EUR][1000 genomes]
rs6467245	0.80[EUR][1000 genomes]
rs6467251	0.89[ASN][1000 genomes]
rs6467258	0.84[ASN][1000 genomes]
rs6944746	0.80[EUR][1000 genomes]
rs701269	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71531176	0.89[ASN][1000 genomes]
rs71531177	0.92[EUR][1000 genomes]
rs7779873	0.92[EUR][1000 genomes]
rs7786174	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7790259	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7793698	0.88[ASN][1000 genomes]
rs7794010	0.88[ASN][1000 genomes]
rs7797266	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7810280	0.88[ASN][1000 genomes]
rs819443	0.89[ASN][1000 genomes]
rs819445	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819455	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs819456	0.83[EUR][1000 genomes]
rs819457	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs819460	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs940542	0.88[ASN][1000 genomes]
rs9649527	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9649529	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80168000-80181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80172800-80177800	Weak transcription	NHDF-Ad	bronchial
3	chr7:80172800-80178000	Weak transcription	Osteobl	bone
4	chr7:80173000-80176600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:80176000-80176600	Weak transcription	Adipose Nuclei	Adipose

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