Variant report

Variant	rs1965524
Chromosome Location	chr7:80180777-80180778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80179936..80183033-chr7:80192105..80194774,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10215822	0.95[EUR][1000 genomes]
rs10215825	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10229705	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10239813	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10249397	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10265053	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10278120	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12531594	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12669206	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13222156	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13222395	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13237390	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13242267	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13245374	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464794	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1524601	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1851937	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1931693	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1965525	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2091178	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091180	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210684	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2366741	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28782219	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28850277	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28872565	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35136290	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4728156	0.90[EUR][1000 genomes]
rs4728157	0.90[EUR][1000 genomes]
rs59057809	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62459940	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6467245	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6944746	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6945398	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6961824	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7778094	0.95[EUR][1000 genomes]
rs7797266	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs819446	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819447	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs819451	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs819452	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs819453	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs819454	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847544	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9649532	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv888525	chr7:80148668-80232471	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80168000-80181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80177400-80182000	Enhancers	Adipose Nuclei	Adipose
3	chr7:80177600-80183000	Weak transcription	Right Ventricle	heart
4	chr7:80178800-80181000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:80178800-80181400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:80178800-80181400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:80178800-80181400	Weak transcription	NHLF	lung
8	chr7:80179000-80181400	Weak transcription	Osteobl	bone
9	chr7:80179200-80181200	Weak transcription	NHDF-Ad	bronchial
10	chr7:80179200-80181400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:80179200-80181400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:80180000-80182000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:80180200-80181000	Weak transcription	Hela-S3	cervix
14	chr7:80180600-80181000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:80180600-80181200	Active TSS	Placenta	Placenta

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