Variant report

Variant	rs12671270
Chromosome Location	chr7:26685934-26685935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26679414..26681978-chr7:26683606..26686442,2	MCF-7	breast:
2	chr7:26684344..26686336-chr7:26690650..26693486,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1012803	0.98[ASN][1000 genomes]
rs1015857	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10230708	0.81[EUR][1000 genomes]
rs10242687	0.99[ASN][1000 genomes]
rs10248160	0.90[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1029436	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10486470	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486471	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1125542	0.98[ASN][1000 genomes]
rs11972163	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12668342	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154152	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154189	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2106904	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2391305	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391306	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35970226	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722627	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57000259	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57999903	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58317468	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58394627	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58630663	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59304553	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59641892	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62446555	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6461960	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6943736	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944239	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944318	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6960206	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968658	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72595043	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782588	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7784174	0.81[EUR][1000 genomes]
rs7785804	0.97[ASN][1000 genomes]
rs7787608	0.90[ASN][1000 genomes]
rs7798139	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7801042	0.81[EUR][1000 genomes]
rs7804935	0.86[CHB][hapmap]
rs7805328	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7807676	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26671200-26693200	Weak transcription	Spleen	Spleen
2	chr7:26678400-26693200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:26678800-26715400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:26679400-26710000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:26680400-26704400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:26682400-26687200	Weak transcription	Fetal Kidney	kidney
7	chr7:26682400-26692200	Weak transcription	Pancreas	Pancrea
8	chr7:26683800-26686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:26683800-26686600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:26684400-26686400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:26684600-26686400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr7:26685000-26686200	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:26685000-26688200	Enhancers	Placenta	Placenta
14	chr7:26685600-26704400	Weak transcription	Primary monocytes fromperipheralblood	blood

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