Variant report

Variant	rs17154152
Chromosome Location	chr7:26667724-26667725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26663687..26665675-chr7:26667700..26669217,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1012803	0.92[ASN][1000 genomes]
rs1015857	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10230708	0.85[EUR][1000 genomes]
rs10242687	0.91[ASN][1000 genomes]
rs10248160	0.81[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs10251530	0.84[EUR][1000 genomes]
rs10252153	0.84[EUR][1000 genomes]
rs10276138	0.84[EUR][1000 genomes]
rs1029436	0.99[EUR][1000 genomes]
rs10486470	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486471	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1125542	0.91[ASN][1000 genomes]
rs11972163	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12668342	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12671270	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17154189	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2106904	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391305	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2391306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28639403	0.84[EUR][1000 genomes]
rs35970226	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4722627	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57000259	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57999903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58317468	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58394627	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58630663	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59304553	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59641892	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60101479	0.84[EUR][1000 genomes]
rs62446548	0.84[EUR][1000 genomes]
rs62446549	0.84[EUR][1000 genomes]
rs62446555	0.99[EUR][1000 genomes]
rs6461960	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943736	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944239	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944318	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6960206	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962850	0.83[EUR][1000 genomes]
rs6967136	0.84[EUR][1000 genomes]
rs6967151	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6967592	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6968658	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72595043	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7782588	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784174	0.85[EUR][1000 genomes]
rs7785804	0.90[ASN][1000 genomes]
rs7787608	0.93[ASN][1000 genomes]
rs7798139	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801042	0.85[EUR][1000 genomes]
rs7804935	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs7805328	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs7807676	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1021253	chr7:26653375-26669899	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17154152	FKBP14	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26667200-26667800	Enhancers	Spleen	Spleen
2	chr7:26667400-26667800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26667400-26667800	Enhancers	Placenta	Placenta
4	chr7:26667400-26667800	Enhancers	Lung	lung
5	chr7:26667400-26668000	Enhancers	Fetal Lung	lung
6	chr7:26667400-26668200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:26667400-26668200	Enhancers	Right Ventricle	heart
8	chr7:26667400-26668400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr7:26667600-26667800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:26667600-26667800	Active TSS	Brain Cingulate Gyrus	brain
11	chr7:26667600-26667800	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr7:26667600-26667800	Active TSS	Brain Hippocampus Middle	brain
13	chr7:26667600-26667800	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr7:26667600-26667800	Active TSS	Brain Substantia Nigra	brain
15	chr7:26667600-26667800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr7:26667600-26668000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr7:26667600-26668000	Active TSS	Brain Anterior Caudate	brain
18	chr7:26667600-26668000	Enhancers	Fetal Stomach	stomach
19	chr7:26667600-26668200	Weak transcription	Right Atrium	heart
20	chr7:26667600-26668400	Enhancers	Fetal Brain Female	brain

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